[HTML][HTML] Role of the extremolytes ectoine and hydroxyectoine as stress protectants and nutrients: genetics, phylogenomics, biochemistry, and structural analysis
Fluctuations in environmental osmolarity are ubiquitous stress factors in many natural habitats
of microorganisms, as they inevitably trigger osmotically instigated fluxes of water across …
of microorganisms, as they inevitably trigger osmotically instigated fluxes of water across …
UniEuk: Time to Speak a Common Language in Protistology!
Universal taxonomic frameworks have been critical tools to structure the fields of botany,
zoology, mycology, and bacteriology as well as their large research communities. Animals, …
zoology, mycology, and bacteriology as well as their large research communities. Animals, …
EPA-ng: massively parallel evolutionary placement of genetic sequences
Next generation sequencing (NGS) technologies have led to a ubiquity of molecular sequence
data. This data avalanche is particularly challenging in metagenetics, which focuses on …
data. This data avalanche is particularly challenging in metagenetics, which focuses on …
[HTML][HTML] Novel roles of formin mDia2 in lamellipodia and filopodia formation in motile cells
C Yang, L Czech, S Gerboth, S Kojima, G Scita… - PLoS …, 2007 - journals.plos.org
Actin polymerization-driven protrusion of the leading edge is a key element of cell motility.
The important actin nucleators formins and the Arp2/3 complex are believed to have …
The important actin nucleators formins and the Arp2/3 complex are believed to have …
[HTML][HTML] Metagenomic analysis using phylogenetic placement—a review of the first decade
Phylogenetic placement refers to a family of tools and methods to analyze, visualize, and
interpret the tsunami of metagenomic sequencing data generated by high-throughput …
interpret the tsunami of metagenomic sequencing data generated by high-throughput …
Genetic diversity loss in the Anthropocene
Anthropogenic habitat loss and climate change are reducing species’ geographic ranges,
increasing extinction risk and losses of species’ genetic diversity. Although preserving genetic …
increasing extinction risk and losses of species’ genetic diversity. Although preserving genetic …
Regulation of hypoxia-induced pulmonary hypertension by vascular smooth muscle hypoxia-inducible factor-1α
…, L Czech, VJ Dudley, L Beussink… - American journal of …, 2014 - atsjournals.org
Rationale: Chronic hypoxia induces pulmonary vascular remodeling, pulmonary hypertension,
and right ventricular hypertrophy. At present, little is known about mechanisms driving …
and right ventricular hypertrophy. At present, little is known about mechanisms driving …
Phylogenetic analysis of SARS-CoV-2 data is difficult
Numerous studies covering some aspects of SARS-CoV-2 data analyses are being published
on a daily basis, including a regularly updated phylogeny on nextstrain.org. Here, we …
on a daily basis, including a regularly updated phylogeny on nextstrain.org. Here, we …
Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests
High animal and plant richness in tropical rainforest communities has long intrigued naturalists.
It is unknown if similar hyperdiversity patterns are reflected at the microbial scale with …
It is unknown if similar hyperdiversity patterns are reflected at the microbial scale with …
Genesis and Gappa: processing, analyzing and visualizing phylogenetic (placement) data
We present genesis, a library for working with phylogenetic data, and gappa, an accompanying
command-line tool for conducting typical analyses on such data. The tools target …
command-line tool for conducting typical analyses on such data. The tools target …