User profiles for L. M. Judd
Louise JuddVerified email at unimelb.edu.au Cited by 13600 |
[HTML][HTML] Unicycler: resolving bacterial genome assemblies from short and long sequencing reads
The Illumina DNA sequencing platform generates accurate but short reads, which can be used
to produce accurate but fragmented genome assemblies. Pacific Biosciences and Oxford …
to produce accurate but fragmented genome assemblies. Pacific Biosciences and Oxford …
[HTML][HTML] Performance of neural network basecalling tools for Oxford Nanopore sequencing
Background Basecalling, the computational process of translating raw electrical signal to
nucleotide sequence, is of critical importance to the sequencing platforms produced by Oxford …
nucleotide sequence, is of critical importance to the sequencing platforms produced by Oxford …
Completing bacterial genome assemblies with multiplex MinION sequencing
Illumina sequencing platforms have enabled widespread bacterial whole genome sequencing.
While Illumina data is appropriate for many analyses, its short read length limits its ability …
While Illumina data is appropriate for many analyses, its short read length limits its ability …
[HTML][HTML] Cytokine signalling via gp130 in gastric cancer
Cytokine signalling pathways that depend on gp130 are dysregulated in several epithelial
cancers including gastric cancer. It has been established that blockade of SHP2 activation of …
cancers including gastric cancer. It has been established that blockade of SHP2 activation of …
Targeting STAT3 in gastric cancer
AS Giraud, TR Menheniott, LM Judd - Expert opinion on therapeutic …, 2012 - Taylor & Francis
… Franic TV, Judd LM, Robinson D, Regulation of gastric epithelial cell development revealed
in H(+)/K(+)-ATPase beta-subunit- and gastrin-deficient mice. Am J Physiol Gastrointest …
in H(+)/K(+)-ATPase beta-subunit- and gastrin-deficient mice. Am J Physiol Gastrointest …
[HTML][HTML] Trycycler: consensus long-read assemblies for bacterial genomes
While long-read sequencing allows for the complete assembly of bacterial genomes, long-read
assemblies contain a variety of errors. Here, we present Trycycler, a tool which produces …
assemblies contain a variety of errors. Here, we present Trycycler, a tool which produces …
Hyperactivation of Stat3 in gp130 mutant mice promotes gastric hyperproliferation and desensitizes TGF-β signaling
The latent transcription factor Stat3 is activated by gp130, the common receptor for the
interleukin (IL)-6 cytokine family and other growth factor and cytokine receptors. Ligand-induced …
interleukin (IL)-6 cytokine family and other growth factor and cytokine receptors. Ligand-induced …
Intravenous ketamine for the treatment of refractory status epilepticus: a retrospective multicenter study
N Gaspard, B Foreman, LM Judd, JN Brenton… - …, 2013 - Wiley Online Library
Purpose To examine patterns of use, efficacy, and safety of intravenous ketamine for the
treatment of refractory status epilepticus ( RSE ). Methods Multicenter retrospective review of …
treatment of refractory status epilepticus ( RSE ). Methods Multicenter retrospective review of …
Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations
Mobile genetic elements (MGEs) that frequently transfer within and between bacterial
species play a critical role in bacterial evolution, and often carry key accessory genes that …
species play a critical role in bacterial evolution, and often carry key accessory genes that …
[HTML][HTML] Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen
Klebsiella pneumoniae is a major cause of opportunistic healthcare-associated infections,
which are increasingly complicated by the presence of extended-spectrum beta-lactamases (…
which are increasingly complicated by the presence of extended-spectrum beta-lactamases (…