User profiles for L. M. Judd

Louise Judd

Verified email at unimelb.edu.au
Cited by 13600

[HTML][HTML] Unicycler: resolving bacterial genome assemblies from short and long sequencing reads

RR Wick, LM Judd, CL Gorrie… - PLoS computational …, 2017 - journals.plos.org
The Illumina DNA sequencing platform generates accurate but short reads, which can be used
to produce accurate but fragmented genome assemblies. Pacific Biosciences and Oxford …

[HTML][HTML] Performance of neural network basecalling tools for Oxford Nanopore sequencing

RR Wick, LM Judd, KE Holt - Genome biology, 2019 - Springer
Background Basecalling, the computational process of translating raw electrical signal to
nucleotide sequence, is of critical importance to the sequencing platforms produced by Oxford …

Completing bacterial genome assemblies with multiplex MinION sequencing

RR Wick, LM Judd, CL Gorrie… - Microbial …, 2017 - microbiologyresearch.org
Illumina sequencing platforms have enabled widespread bacterial whole genome sequencing.
While Illumina data is appropriate for many analyses, its short read length limits its ability …

[HTML][HTML] Cytokine signalling via gp130 in gastric cancer

M Howlett, TR Menheniott, LM Judd… - Biochimica et Biophysica …, 2009 - Elsevier
Cytokine signalling pathways that depend on gp130 are dysregulated in several epithelial
cancers including gastric cancer. It has been established that blockade of SHP2 activation of …

Targeting STAT3 in gastric cancer

AS Giraud, TR Menheniott, LM Judd - Expert opinion on therapeutic …, 2012 - Taylor & Francis
… Franic TV, Judd LM, Robinson D, Regulation of gastric epithelial cell development revealed
in H(+)/K(+)-ATPase beta-subunit- and gastrin-deficient mice. Am J Physiol Gastrointest …

[HTML][HTML] Trycycler: consensus long-read assemblies for bacterial genomes

RR Wick, LM Judd, LT Cerdeira, J Hawkey, G Méric… - Genome biology, 2021 - Springer
While long-read sequencing allows for the complete assembly of bacterial genomes, long-read
assemblies contain a variety of errors. Here, we present Trycycler, a tool which produces …

Hyperactivation of Stat3 in gp130 mutant mice promotes gastric hyperproliferation and desensitizes TGF-β signaling

…, SA Jones, N Topley, H Baumann, LM Judd… - Nature medicine, 2005 - nature.com
The latent transcription factor Stat3 is activated by gp130, the common receptor for the
interleukin (IL)-6 cytokine family and other growth factor and cytokine receptors. Ligand-induced …

Intravenous ketamine for the treatment of refractory status epilepticus: a retrospective multicenter study

N Gaspard, B Foreman, LM Judd, JN Brenton… - …, 2013 - Wiley Online Library
Purpose To examine patterns of use, efficacy, and safety of intravenous ketamine for the
treatment of refractory status epilepticus ( RSE ). Methods Multicenter retrospective review of …

Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations

…, RR Wick, KL Wyres, CL Gorrie, LM Judd… - Microbial …, 2018 - microbiologyresearch.org
Mobile genetic elements (MGEs) that frequently transfer within and between bacterial
species play a critical role in bacterial evolution, and often carry key accessory genes that …

[HTML][HTML] Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen

CL Gorrie, M Mirčeta, RR Wick, LM Judd… - Nature …, 2022 - nature.com
Klebsiella pneumoniae is a major cause of opportunistic healthcare-associated infections,
which are increasingly complicated by the presence of extended-spectrum beta-lactamases (…