Navigating the pitfalls of applying machine learning in genomics
The scale of genetic, epigenomic, transcriptomic, cheminformatic and proteomic data
available today, coupled with easy-to-use machine learning (ML) toolkits, has propelled the …
available today, coupled with easy-to-use machine learning (ML) toolkits, has propelled the …
[HTML][HTML] Silica, silicosis, and autoimmunity
KM Pollard - Frontiers in immunology, 2016 - frontiersin.org
Inhalation of dust containing crystalline silica is associated with a number of acute and
chronic diseases including systemic autoimmune diseases. Evidence for the link with …
chronic diseases including systemic autoimmune diseases. Evidence for the link with …
[HTML][HTML] Interferon-γ and systemic autoimmunity
The term interferon describes a family of proteins consisting of three major types (I, II, III)
which differ in their primary protein sequences, cognate receptors, genetic loci, and cell types …
which differ in their primary protein sequences, cognate receptors, genetic loci, and cell types …
Detection of nonneutral substitution rates on mammalian phylogenies
Methods for detecting nucleotide substitution rates that are faster or slower than expected
under neutral drift are widely used to identify candidate functional elements in genomic …
under neutral drift are widely used to identify candidate functional elements in genomic …
[HTML][HTML] A communal catalogue reveals Earth's multiscale microbial diversity
Our growing awareness of the microbial world’s importance and diversity contrasts starkly
with our limited understanding of its fundamental structure. Despite recent advances in DNA …
with our limited understanding of its fundamental structure. Despite recent advances in DNA …
Discovery of a cool planet of 5.5 Earth masses through gravitational microlensing
…, K Pollard, K Sahu, C Vinter, J Wambsganss, K Woller… - Nature, 2006 - nature.com
In the favoured core-accretion model of formation of planetary systems, solid planetesimals
accumulate to build up planetary cores, which then accrete nebular gas if they are sufficiently …
accumulate to build up planetary cores, which then accrete nebular gas if they are sufficiently …
[HTML][HTML] A high-resolution map of human evolutionary constraint using 29 mammals
The comparison of related genomes has emerged as a powerful lens for genome interpretation.
Here we report the sequencing and comparative analysis of 29 eutherian genomes. We …
Here we report the sequencing and comparative analysis of 29 eutherian genomes. We …
[PDF][PDF] Amplification-free detection of SARS-CoV-2 with CRISPR-Cas13a and mobile phone microscopy
…, B Joehnk, K Walcott, A Sil, C Langelier, KS Pollard… - Cell, 2021 - cell.com
The December 2019 outbreak of a novel respiratory virus, SARS-CoV-2, has become an
ongoing global pandemic due in part to the challenge of identifying symptomatic, asymptomatic, …
ongoing global pandemic due in part to the challenge of identifying symptomatic, asymptomatic, …
[HTML][HTML] A unified catalog of 204,938 reference genomes from the human gut microbiome
Comprehensive, high-quality reference genomes are required for functional characterization
and taxonomic assignment of the human gut microbiota. We present the Unified Human …
and taxonomic assignment of the human gut microbiota. We present the Unified Human …
An RNA gene expressed during cortical development evolved rapidly in humans
The developmental and evolutionary mechanisms behind the emergence of human-specific
brain features remain largely unknown. However, the recent ability to compare our genome …
brain features remain largely unknown. However, the recent ability to compare our genome …