Design of efficient computational workflows for in silico drug repurposing

…, P Mamoshina, AM Aliper, A Artemov, K Lezhnina… - Drug Discovery …, 2017 - Elsevier
Highlights • Conceptual foundations of the drug repurposing paradigm are reviewed. •
Description of the technological trends behind the raise of in silico repurposing. • The different …

[HTML][HTML] In silico Pathway Activation Network Decomposition Analysis (iPANDA) as a method for biomarker development

IV Ozerov, KV Lezhnina, E Izumchenko… - Nature …, 2016 - nature.com
… end points available for comparison F, J, K). The highest increase in performance was
achieved on neuroblastoma event free survival (end point K) (0.894 against 0.575 for the best …

[HTML][HTML] A review of the biomedical innovations for healthy longevity

…, A Kulminski, E Lashmanova, K Lezhnina… - Aging (Albany …, 2017 - ncbi.nlm.nih.gov
The field of biogerontology and regenerative medicine is rapidly evolving with many new
advances in aging research promising to transform healthcare and extend healthy productive …

Data aggregation at the level of molecular pathways improves stability of experimental transcriptomic and proteomic data

…, O Kovalchuk, A Aliper, E Ilnitskaya, K Lezhnina… - Cell cycle, 2017 - Taylor & Francis
High throughput technologies opened a new era in biomedicine by enabling massive
analysis of gene expression at both RNA and protein levels. Unfortunately, expression data …

[HTML][HTML] A method for predicting target drug efficiency in cancer based on the analysis of signaling pathway activation

A Artemov, A Aliper, M Korzinkin, K Lezhnina, L Jellen… - Oncotarget, 2015 - ncbi.nlm.nih.gov
A new generation of anticancer therapeutics called target drugs has quickly developed in
the 21 st century. These drugs are tailored to inhibit cancer cell growth, proliferation, and …

[HTML][HTML] Intrasubtype reassortments cause adaptive amino acid replacements in H3N2 influenza genes

AD Neverov, KV Lezhnina, AS Kondrashov… - PLoS …, 2014 - journals.plos.org
Reassortments and point mutations are two major contributors to diversity of Influenza A
virus; however, the link between these two processes is unclear. It has been suggested that …

[HTML][HTML] Novel robust biomarkers for human bladder cancer based on activation of intracellular signaling pathways

K Lezhnina, O Kovalchuk, AA Zhavoronkov… - Oncotarget, 2014 - ncbi.nlm.nih.gov
We recently proposed a new bioinformatic algorithm called OncoFinder for quantifying the
activation of intracellular signaling pathways. It was proved advantageous for minimizing …

[HTML][HTML] In silico analysis of pathways activation landscape in oral squamous cell carcinoma and oral leukoplakia

…, N London, M Teka, I Ozerov, K Lezhnina… - Cell death …, 2017 - nature.com
A subset of patients with oral squamous cell carcinoma (OSCC), the most common subtype
of head and neck squamous cell carcinoma (HNSCC), harbor dysplastic lesions (often …

[HTML][HTML] New function of the myostatin/activin type I receptor (ALK4) as a mediator of muscle atrophy and muscle regeneration

…, W Arindrarto, R Wolterbeek, KV Lezhnina… - The FASEB …, 2017 - ncbi.nlm.nih.gov
… Wolterbeek performed statistical analyses for fiber size distribution; KV Lezhnina performed
pathway analyses using the OncoFinder method; IV Ozerov and AM Aliper developed the …

Impact of The Pandemic and Geopolitical Crises on The International Financial System: Short and Long Term Effects

…, A Ivanova, K Lezhnina, K Pastukhina… - Весенние дни науки …, 2023 - elar.urfu.ru
The COVID-19 pandemic and geopolitical crises have had a significant impact on the
international financial system in both the short and long term. Governments and central banks …