Macromolecular modeling and design in Rosetta: recent methods and frameworks
The Rosetta software for macromolecular modeling, docking and design is extensively used
in laboratories worldwide. During two decades of development by a community of …
in laboratories worldwide. During two decades of development by a community of …
Are we ready for back-to-nature crop breeding?
Sustainable agriculture in response to increasing demands for food depends on development
of high-yielding crops with high nutritional value that require minimal intervention during …
of high-yielding crops with high nutritional value that require minimal intervention during …
[HTML][HTML] Feasibility of new breeding techniques for organic farming
Organic farming is based on the concept of working ‘with nature' instead of against it; however,
compared with conventional farming, organic farming reportedly has lower productivity. …
compared with conventional farming, organic farming reportedly has lower productivity. …
The Rosetta all-atom energy function for macromolecular modeling and design
… Thus, for each water site k with coordinates v i,k , we compute an occlusion measure d k 2 to
… )Next, we find the soft minimum of d k 2 over all water sites in by computing the logarithmic …
… )Next, we find the soft minimum of d k 2 over all water sites in by computing the logarithmic …
Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures
The discovery and design of biologically important RNA molecules is outpacing three-dimensional
structural characterization. Here, we demonstrate that cryo-electron microscopy can …
structural characterization. Here, we demonstrate that cryo-electron microscopy can …
[HTML][HTML] Identifying fishes through DNA barcodes and microarrays
…, C Hervet, S Hjörleifsdottir, G Hreggvidsson, K Kappel… - PloS one, 2010 - journals.plos.org
Background International fish trade reached an import value of 62.8 billion Euro in 2006, of
which 44.6% are covered by the European Union. Species identification is a key problem …
which 44.6% are covered by the European Union. Species identification is a key problem …
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme
RNA-Puzzles is a collective experiment in blind 3D RNA structure prediction. We report
here a third round of RNA-Puzzles. Five puzzles, 4, 8, 12, 13, 14, all structures of riboswitch …
here a third round of RNA-Puzzles. Five puzzles, 4, 8, 12, 13, 14, all structures of riboswitch …
Cryo-EM structures of full-length Tetrahymena ribozyme at 3.1 Å resolution
Single-particle cryogenic electron microscopy (cryo-EM) has become a standard technique
for determining protein structures at atomic resolution 1 , 2 – 3 . However, cryo-EM studies of …
for determining protein structures at atomic resolution 1 , 2 – 3 . However, cryo-EM studies of …
A unified mechanism for intron and exon definition and back-splicing
The molecular mechanisms of exon definition and back-splicing are fundamental unanswered
questions in pre-mRNA splicing. Here we report cryo-electron microscopy structures of …
questions in pre-mRNA splicing. Here we report cryo-electron microscopy structures of …
Accelerating the domestication of new crops: feasibility and approaches
The domestication of new crops would promote agricultural diversity and could provide a
solution to many of the problems associated with intensive agriculture. We suggest here that …
solution to many of the problems associated with intensive agriculture. We suggest here that …