User profiles for K. Hokamp
Karsten HokampBioinformatics Research Officer, Smurfit Institute of Genetics, Trinity College Dublin Verified email at tcd.ie Cited by 38180 |
Receptor‐mediated recognition of mycobacterial pathogens
Mycobacteria are a genus of bacteria that range from the non‐pathogenic M ycobacterium
smegmatis to M ycobacterium tuberculosis, the causative agent of tuberculosis in humans. …
smegmatis to M ycobacterium tuberculosis, the causative agent of tuberculosis in humans. …
A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome
The Arabidopsis genome contains numerous large duplicated chromosomal segments, but
the different approaches used in previous analyses led to different interpretations regarding …
the different approaches used in previous analyses led to different interpretations regarding …
Modulation of the TLR-mediated inflammatory response by the endogenous human host defense peptide LL-37
…, S Doria, R Falsafi, K Hokamp… - The Journal of …, 2006 - journals.aai.org
… Differentially expressed genes with similar temporal expression profiles were clustered
using the partitioning algorithm K-means procedure (as implemented in TIGR’s Multiple …
using the partitioning algorithm K-means procedure (as implemented in TIGR’s Multiple …
Extensive genomic duplication during early chordate evolution
Opinions on the hypothesis 1 that ancient genome duplications contributed to the vertebrate
genome range from strong skepticism 2, 3, 4 to strong credence 5, 6, 7. Previous studies …
genome range from strong skepticism 2, 3, 4 to strong credence 5, 6, 7. Previous studies …
[PDF][PDF] An infection-relevant transcriptomic compendium for Salmonella enterica Serovar Typhimurium
… CK, K. Hokamp, and JCDH analyzed and interpreted the data. AC, SS, K. Händler, SKS,
DLH, RC, and TC contributed to data analysis and interpretation. …
DLH, RC, and TC contributed to data analysis and interpretation. …
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
…, SK Sivasankaran, K Hokamp… - Proceedings of the …, 2012 - National Acad Sciences
More than 50 y of research have provided great insight into the physiology, metabolism, and
molecular biology of Salmonella enterica serovar Typhimurium (S. Typhimurium), but …
molecular biology of Salmonella enterica serovar Typhimurium (S. Typhimurium), but …
The complex relationship of gene duplication and essentiality
… (K A ) between a duplicated gene and its closest paralog. The y-axis indicates the P E in each
K … However, when we focused on genes with K A >0.2, because highly constrained genes …
K … However, when we focused on genes with K A >0.2, because highly constrained genes …
The 2R hypothesis and the human genome sequence
… They measured the amount of divergence at synonymous sites (K,) between homologous
gene pairs. From this they found that the homologues were in four age classes arranged …
gene pairs. From this they found that the homologues were in four age classes arranged …
InnateDB: facilitating systems‐level analyses of the mammalian innate immune response
Although considerable progress has been made in dissecting the signaling pathways involved
in the innate immune response, it is now apparent that this response can no longer be …
in the innate immune response, it is now apparent that this response can no longer be …
Circadian control of innate immunity in macrophages by miR-155 targeting Bmal1
The response to an innate immune challenge is conditioned by the time of day, but the
molecular basis for this remains unclear. In myeloid cells, there is a temporal regulation to …
molecular basis for this remains unclear. In myeloid cells, there is a temporal regulation to …