User profiles for K. Froussios
Kimon FroussiosResearch Institute for Molecular Pathology Verified email at imp.ac.at Cited by 509 |
Isolating live cell clones from barcoded populations using CRISPRa-inducible reporters
…, F Holstein, L Formenti, J Jude, K Froussios… - Nature …, 2021 - nature.com
We developed a functional lineage tracing tool termed CaTCH (CRISPRa tracing of clones
in heterogeneous cell populations). CaTCH combines precise clonal tracing of millions of …
in heterogeneous cell populations). CaTCH combines precise clonal tracing of millions of …
[HTML][HTML] Amyloidogenic determinants are usually not buried
KK Frousios, VA Iconomidou, CM Karletidi… - BMC structural …, 2009 - Springer
Background Amyloidoses are a group of usually fatal diseases, probably caused by protein
misfolding and subsequent aggregation into amyloid fibrillar deposits. The mechanisms …
misfolding and subsequent aggregation into amyloid fibrillar deposits. The mechanisms …
[HTML][HTML] Predicting the functional consequences of non-synonymous DNA sequence variants—evaluation of bioinformatics tools and development of a consensus …
The study of DNA sequence variation has been transformed by recent advances in DNA
sequencing technologies. Determination of the functional consequences of sequence variant …
sequencing technologies. Determination of the functional consequences of sequence variant …
[HTML][HTML] Relative abundance of transcripts (RATs): identifying differential isoform abundance from RNA-seq
K Froussios, K Mourão, G Simpson, G Barton… - …, 2019 - ncbi.nlm.nih.gov
… Instead, these tools combine a pseudo-mapping of the k-mers present within each read to
the k-mer distributions from the transcriptome annotation with an expectation maximization …
the k-mer distributions from the transcriptome annotation with an expectation maximization …
SPOP targets the immune transcription factor IRF1 for proteasomal degradation
…, M de Almeida, K Hacker, J Wang, K Froussios… - Elife, 2023 - elifesciences.org
Adaptation of the functional proteome is essential to counter pathogens during infection, yet
precisely timed degradation of these response proteins after pathogen clearance is likewise …
precisely timed degradation of these response proteins after pathogen clearance is likewise …
HUWE1 controls tristetraprolin proteasomal degradation by regulating its phosphorylation
…, I Schwartz, K Hacker, R Gogova, R Kalis, K Froussios… - Elife, 2023 - elifesciences.org
Tristetraprolin (TTP) is a critical negative immune regulator. It binds AU-rich elements in the
untranslated-regions of many mRNAs encoding pro-inflammatory mediators, thereby …
untranslated-regions of many mRNAs encoding pro-inflammatory mediators, thereby …
[HTML][HTML] Detection and mitigation of spurious antisense expression with RoSA
…, R Lucoszek, K Froussios, K MacKinnon… - …, 2019 - f1000research.com
Antisense transcription is known to have a range of impacts on sense gene expression,
including (but not limited to) impeding transcription initiation, disrupting post-transcriptional …
including (but not limited to) impeding transcription initiation, disrupting post-transcriptional …
REAL: an efficient REad ALigner for next generation sequencing reads
… be at least m − k letters belonging to the pattern [21]. In our case, by requiring ν − k of the
fragments (instead of all of them) to be perfectly matched on t, the non-candidates can be …
fragments (instead of all of them) to be perfectly matched on t, the non-candidates can be …
How well do RNA-Seq differential gene expression tools perform in a complex eukaryote? A case study in Arabidopsis thaliana
K Froussios, NJ Schurch, K Mackinnon… - …, 2019 - academic.oup.com
… Kimon Froussios … The authors wish it to be known that, in their opinion, Kimon Froussios
and Nick J. … The authors wish it to be known that, in their opinion, Kimon Froussios and Nick J. …
and Nick J. … The authors wish it to be known that, in their opinion, Kimon Froussios and Nick J. …
Identifying differential isoform abundance with RATs: a universal tool and a warning
K Froussios, K Mourão, GG Simpson, GJ Barton… - BioRxiv, 2017 - biorxiv.org
… Instead, these tools combine a pseudo-mapping of the k-mers present within each read
to the k-mer distributions from the transcript annotation with an expectation maximization …
to the k-mer distributions from the transcript annotation with an expectation maximization …