User profiles for K. Forslund
Sofia K. ForslundJunior Group Leader, ECRC (joint Max Delbrück Center and Charité University Hospital unit … Verified email at embl.de Cited by 56898 |
STRING v10: protein–protein interaction networks, integrated over the tree of life
…, A Franceschini, S Wyder, K Forslund… - Nucleic acids …, 2015 - academic.oup.com
The many functional partnerships and interactions that occur between proteins are at the
core of cellular processing and their systematic characterization helps to provide context in …
core of cellular processing and their systematic characterization helps to provide context in …
Human gut microbes impact host serum metabolome and insulin sensitivity
Insulin resistance is a forerunner state of ischaemic cardiovascular disease and type 2
diabetes. Here we show how the human gut microbiome impacts the serum metabolome and …
diabetes. Here we show how the human gut microbiome impacts the serum metabolome and …
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota
In recent years, several associations between common chronic human disorders and altered
gut microbiome composition and function have been reported 1 , 2 . In most of these reports…
gut microbiome composition and function have been reported 1 , 2 . In most of these reports…
The Pfam protein families database
…, J Tate, C Boursnell, N Pang, K Forslund… - Nucleic acids …, 2012 - academic.oup.com
Pfam is a widely used database of protein families, currently containing more than 13 000
manually curated protein families as of release 26.0. Pfam is available via servers in the UK ( …
manually curated protein families as of release 26.0. Pfam is available via servers in the UK ( …
The Pfam protein families database
…, P Gunasekaran, G Ceric, K Forslund… - Nucleic acids …, 2010 - academic.oup.com
Pfam is a widely used database of protein families and domains. This article describes a set
of major updates that we have implemented in the latest release (version 24.0). The most …
of major updates that we have implemented in the latest release (version 24.0). The most …
The Pfam protein families database
Pfam is a comprehensive collection of protein domains and families, represented as multiple
sequence alignments and as profile hidden Markov models. The current release of Pfam (…
sequence alignments and as profile hidden Markov models. The current release of Pfam (…
Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper
Orthology assignment is ideally suited for functional inference. However, because predicting
orthology is computationally intensive at large scale, and most pipelines are relatively …
orthology is computationally intensive at large scale, and most pipelines are relatively …
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
eggNOG is a public resource that provides Orthologous Groups (OGs) of proteins at
different taxonomic levels, each with integrated and summarized functional annotations. …
different taxonomic levels, each with integrated and summarized functional annotations. …
Salt-responsive gut commensal modulates TH17 axis and disease
… The protocol was modified from the manufacturer’s instructions to include proteinase K
treatment to further lyse the cells. After addition of proteinase K (final concentration 5 mg ml −1 ) …
treatment to further lyse the cells. After addition of proteinase K (final concentration 5 mg ml −1 ) …
[HTML][HTML] Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children
…, A Salonen, LJ Virta, RA Kekkonen, K Forslund… - Nature …, 2016 - nature.com
Early-life antibiotic use is associated with increased risk for metabolic and immunological
diseases, and mouse studies indicate a causal role of the disrupted microbiome. However, …
diseases, and mouse studies indicate a causal role of the disrupted microbiome. However, …