User profiles for K. Blin

Kai Blin

Senior Researcher at the Novo Nordisk Foundation Center for Biosustainability
Verified email at biosustain.dtu.dk
Cited by 15940

antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline

K Blin, S Shaw, K Steinke, R Villebro… - Nucleic acids …, 2019 - academic.oup.com
Secondary metabolites produced by bacteria and fungi are an important source of
antimicrobials and other bioactive compounds. In recent years, genome mining has seen broad …

Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters

K Blin, HU Kim, MH Medema… - Briefings in …, 2019 - academic.oup.com
Many drugs are derived from small molecules produced by microorganisms and plants, so-called
natural products. Natural products have diverse chemical structures, but the …

antiSMASH 6.0: improving cluster detection and comparison capabilities

K Blin, S Shaw, AM Kloosterman… - Nucleic acids …, 2021 - academic.oup.com
Many microorganisms produce natural products that form the basis of antimicrobials,
antivirals, and other drugs. Genome mining is routinely used to complement screening-based …

antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation

K Blin, S Shaw, HE Augustijn, ZL Reitz… - Nucleic acids …, 2023 - academic.oup.com
Microorganisms produce small bioactive compounds as part of their secondary or specialised
metabolism. Often, such metabolites have antimicrobial, anticancer, antifungal, antiviral or …

[HTML][HTML] Minimum information about a biosynthetic gene cluster

…, P Yilmaz, M Cummings, JB Biggins, K Blin… - Nature chemical …, 2015 - nature.com
A wide variety of enzymatic pathways that produce specialized metabolites in bacteria, fungi
and plants are known to be encoded in biosynthetic gene clusters. Information about these …

antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters

T Weber, K Blin, S Duddela, D Krug… - Nucleic acids …, 2015 - academic.oup.com
Microbial secondary metabolism constitutes a rich source of antibiotics, chemotherapeutics,
insecticides and other high-value chemicals. Genome mining of gene clusters that encode …

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

MH Medema, K Blin, P Cimermancic… - Nucleic acids …, 2011 - academic.oup.com
Bacterial and fungal secondary metabolism is a rich source of novel bioactive compounds
with potential pharmaceutical applications as antibiotics, anti-tumor drugs or cholesterol-…

antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification

K Blin, T Wolf, MG Chevrette, X Lu… - Nucleic acids …, 2017 - academic.oup.com
Many antibiotics, chemotherapeutics, crop protection agents and food preservatives originate
from molecules produced by bacteria, fungi or plants. In recent years, genome mining …

MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters

BR Terlouw, K Blin, JC Navarro-Muñoz… - Nucleic acids …, 2023 - academic.oup.com
With an ever-increasing amount of (meta)genomic data being deposited in sequence databases,
(meta)genome mining for natural product biosynthetic pathways occupies a critical role …

Artificial intelligence for natural product drug discovery

…, D Meijer, BR Terlouw, F Biermann, K Blin… - Nature Reviews Drug …, 2023 - nature.com
Developments in computational omics technologies have provided new means to access the
hidden diversity of natural products, unearthing new potential for drug discovery. In parallel…