User profiles for K. S. Rathi

Komal S Rathi

Bioinformatics Scientist III at Children's Hospital of Philadelphia
Verified email at email.chop.edu
Cited by 1816

Hedgehog actively maintains adult lung quiescence and regulates repair and regeneration

T Peng, DB Frank, RS Kadzik, MP Morley, KS Rathi… - Nature, 2015 - nature.com
Postnatal tissue quiescence is thought to be a default state in the absence of a proliferative
stimulus such as injury. Although previous studies have demonstrated that certain embryonic …

[PDF][PDF] Comprehensive multi-omics analysis reveals mitochondrial stress as a central biological hub for spaceflight impact

…, EC Laiakis, MS Kim, C Meydan, Y Kidane, KS Rathi… - Cell, 2020 - cell.com
Spaceflight is known to impose changes on human physiology with unknown molecular
etiologies. To reveal these causes, we used a multi-omics, systems biology analytical approach …

[PDF][PDF] Genomic profiling of childhood tumor patient-derived xenograft models to enable rational clinical trial design

JL Rokita, KS Rathi, MF Cardenas, KA Upton… - Cell reports, 2019 - cell.com
Accelerating cures for children with cancer remains an immediate challenge as a result of
extensive oncogenic heterogeneity between and within histologies, distinct molecular …

Long noncoding RNAs are spatially correlated with transcription factors and regulate lung development

…, DT Swarr, MP Morley, KS Rathi… - Genes & …, 2014 - genesdev.cshlp.org
Long noncoding RNAs (lncRNAs) are thought to play important roles in regulating gene
transcription, but few have well-defined expression patterns or known biological functions during …

[PDF][PDF] Identification of GPC2 as an oncoprotein and candidate immunotherapeutic target in high-risk neuroblastoma

…, Z Zhu, M Lane, D Martinez, S Heitzeneder, KS Rathi… - Cancer cell, 2017 - cell.com
We developed an RNA-sequencing-based pipeline to discover differentially expressed cell-surface
molecules in neuroblastoma that meet criteria for optimal immunotherapeutic target …

The ADP/ATP translocase drives mitophagy independent of nucleotide exchange

…, CS Evans, B Gosis, MP Morley, KS Rathi… - Nature, 2019 - nature.com
Mitochondrial homeostasis depends on mitophagy, the programmed degradation of
mitochondria. Only a few proteins are known to participate in mitophagy. Here we develop a …

[HTML][HTML] Clinical utility of custom-designed NGS panel testing in pediatric tumors

LF Surrey, SP MacFarland, F Chang, K Cao, KS Rathi… - Genome medicine, 2019 - Springer
Background Somatic genetic testing is rapidly becoming the standard of care in many adult
and pediatric cancers. Previously, the standard approach was single-gene or focused …

[PDF][PDF] Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality

MT Dang, MV Gonzalez, KS Gaonkar, KS Rathi… - Cell reports, 2021 - cell.com
Tumor-associated macrophages (TAMs) play an important role in tumor immunity and comprise
of subsets that have distinct phenotype, function, and ontology. Transcriptomic analyses …

YAP1 mediates resistance to MEK1/2 inhibition in neuroblastomas with hyperactivated RAS signaling

GE Coggins, A Farrel, KS Rathi, CM Hayes, L Scolaro… - Cancer research, 2019 - AACR
High-risk neuroblastomas with hyperactivated RAS signaling escape the selective pressure
of MEK inhibition via YAP1-mediated transcriptional reprogramming and may be sensitive to …

Targeting PARP-1 with alpha-particles is potently cytotoxic to human neuroblastoma in preclinical models

…, H Lee, LN Puentes, SW Reilly, KS Rathi… - Molecular cancer …, 2019 - AACR
Alpha-emitters can be pharmacologically delivered for irradiation of single cancer cells, but
cellular lethality could be further enhanced by targeting alpha-emitters directly to the nucleus. …