User profiles for K. J. van der Velde

K. Joeri van der Velde

University Medical Center Groningen, Dept. of Genetics, Genomics Coordination Center
Verified email at umcg.nl
Cited by 2559

An Overview and Online Registry of Microvillus Inclusion Disease Patients and their MYO5B Mutations

KJ van der Velde, HS Dhekne, MA Swertz… - Human …, 2013 - Wiley Online Library
Microvillus inclusion disease ( MVID ) is one of the most severe congenital intestinal disorders
and is characterized by neonatal secretory diarrhea and the inability to absorb nutrients …

MYO5B, STX3, and STXBP2 mutations reveal a common disease mechanism that unifies a subset of congenital diarrheal disorders: A mutation update

…, AW Overeem, RJ Ferreira, KJ van Der Velde… - Human …, 2018 - Wiley Online Library
Microvillus inclusion disease (MVID) is a rare but fatal autosomal recessive congenital
diarrheal disorder caused by MYO5B mutations. In 2013, we launched an open‐access registry …

[HTML][HTML] Genotype harmonizer: automatic strand alignment and format conversion for genotype data integration

P Deelen, MJ Bonder, KJ Van Der Velde, HJ Westra… - BMC research …, 2014 - Springer
Background To gain statistical power or to allow fine mapping, researchers typically want to
pool data before meta-analyses or genotype imputation. However, the necessary …

[HTML][HTML] Improving the diagnostic yield of exome-sequencing by predicting gene–phenotype associations using large-scale gene expression analysis

…, P Folkertsma, T Gillett, KJ van der Velde… - Nature …, 2019 - nature.com
The diagnostic yield of exome and genome sequencing remains low (8–70%), due to
incomplete knowledge on the genes that cause disease. To improve this, we use RNA-seq data …

[HTML][HTML] The 1000IBD project: multi-omics data of 1000 inflammatory bowel disease patients; data release 1

F Imhann, KJ Van der Velde, R Barbieri, R Alberts… - BMC …, 2019 - Springer
KJ Van der Velde … de Haan for helping set up the 1000IBD IT infrastructure; David van
Enckevort and Carin Tappel for making 1000IBD findable in catalogues; the … KJ Van der Velde

[HTML][HTML] Calling genotypes from public RNA-sequencing data enables identification of genetic variants that affect gene-expression levels

…, MJ Bonder, J Karjalainen, KJ Van Der Velde… - Genome medicine, 2015 - Springer
Background RNA-sequencing (RNA-seq) is a powerful technique for the identification of
genetic variants that affect gene-expression levels, either through expression quantitative trait …

[HTML][HTML] GAVIN: Gene-Aware variant interpretation for medical sequencing

KJ van der Velde, EN de Boer, CC van Diemen… - Genome biology, 2017 - Springer
We present Gene-Aware Variant INterpretation (GAVIN), a new method that accurately
classifies variants for clinical diagnostic purposes. Classifications are based on gene-specific …

MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians

KJ van der Velde, F Imhann, B Charbon, C Pang… - …, 2019 - academic.oup.com
Motivation The volume and complexity of biological data increases rapidly. Many clinical
professionals and biomedical researchers without a bioinformatics background are generating …

[HTML][HTML] FAIR Genomes metadata schema promoting Next Generation Sequencing data reuse in Dutch healthcare and research

KJ van der Velde, G Singh, R Kaliyaperumal, XF Liao… - Scientific data, 2022 - nature.com
The genomes of thousands of individuals are profiled within Dutch healthcare and research
each year. However, this valuable genomic data, associated clinical data and consent are …

[HTML][HTML] Therapeutic prospects of exon skipping for epidermolysis bullosa

…, KJ van der Velde, PC van den Akker - International Journal of …, 2021 - mdpi.com
Epidermolysis bullosa is a group of genetic skin conditions characterized by abnormal skin (and
mucosal) fragility caused by pathogenic variants in various genes. The disease severity …