User profiles for K. A. Torkenczy

Kristof A Torkenczy

Post Doctoral Researcher at New York Genome center
Verified email at nygenome.org
Cited by 822

Sequencing thousands of single-cell genomes with combinatorial indexing

SA Vitak, KA Torkenczy, JL Rosenkrantz, AJ Fields… - Nature …, 2017 - nature.com
Single-cell genome sequencing has proven valuable for the detection of somatic variation,
particularly in the context of tumor evolution. Current technologies suffer from high library …

Highly scalable generation of DNA methylation profiles in single cells

…, D Pokholok, SJ Norberg, KA Torkenczy… - Nature …, 2018 - nature.com
We present a highly scalable assay for whole-genome methylation profiling of single cells.
We use our approach, single-cell combinatorial indexing for methylation analysis (sci-MET), …

Single-cell sequencing of primate preimplantation embryos reveals chromosome elimination via cellular fragmentation and blastomere exclusion

…, SS Fei, N Redmayne, KA Torkenczy… - Genome …, 2019 - genome.cshlp.org
Aneuploidy that arises during meiosis and/or mitosis is a major contributor to early embryo
loss. We previously showed that human preimplantation embryos encapsulate missegregated …

The accessible chromatin landscape of the murine hippocampus at single-cell resolution

JR Sinnamon, KA Torkenczy, MW Linhoff… - Genome …, 2019 - genome.cshlp.org
Here we present a comprehensive map of the accessible chromatin landscape of the
mouse hippocampus at single-cell resolution. Substantial advances of this work include the …

[HTML][HTML] Spatially mapped single-cell chromatin accessibility

CA Thornton, RM Mulqueen, KA Torkenczy… - Nature …, 2021 - nature.com
High-throughput single-cell epigenomic assays can resolve cell type heterogeneity in complex
tissues, however, spatial orientation is lost. Here, we present single-cell combinatorial …

Improved single-cell ATAC-seq reveals chromatin dynamics of in vitro corticogenesis

…, BA DeRosa, CA Thornton, Z Sayar, KA Torkenczy… - bioRxiv, 2019 - biorxiv.org
Abstract Development is a complex process that requires the precise modulation of
regulatory gene networks controlled through dynamic changes in the epigenome. Single-cell-omic …

Scalable and efficient single-cell DNA methylation sequencing by combinatorial indexing

…, S Norberg, AJ Fields, D Sun, KA Torkenczy… - BioRxiv, 2017 - biorxiv.org
Here we present a novel method: single-cell combinatorial indexing for methylation analysis
(sci-MET), which is the first highly scalable assay for whole genome methylation profiling of …

[PDF][PDF] Chromosome removal via cellular fragmentation and aneuploid blastomere exclusion in primate embryos

…, NH Lazar, SS Fei, N Redmayne, KA Torkenczy - bioRxiv, 2018 - scholar.archive.org
Chromosome Removal Via Cellular Fragmentation and Aneuploid Blastomere Exclusion in
Primate Embryos Page 1 1 Chromosome Removal Via Cellular Fragmentation and Aneuploid …

Single-Cell Sequencing of Primate Preimplantation Embryos Reveals Chromosome Elimination Via Cellular Fragmentation and Blastomere Exclusion

…, KA Torkenczy, A Adey, L Gao, B Park, KA Nevonen… - bioRxiv, 2018 - biorxiv.org
Aneuploidy that arises during meiosis and/or mitosis is a major contributor to early embryo
loss. We previously demonstrated that human preimplantation embryos encapsulate mis-…

The accessible chromatin landscape of the hippocampus at single-cell resolution

JR Sinnamon, KA Torkenczy, MW Linhoff, S Vitak… - bioRxiv, 2018 - biorxiv.org
Here we present a comprehensive map of the accessible chromatin landscape of the
mouse hippocampus at single-cell resolution. Substantial advances of this work include the …