User profiles for J. Tinevez

Jean-Yves Tinevez

Research engineer, Institut Pasteur, Paris, France
Verified email at pasteur.fr
Cited by 61109

Fiji: an open-source platform for biological-image analysis

…, C Rueden, S Saalfeld, B Schmid, JY Tinevez… - Nature …, 2012 - nature.com
… (f–j) Globally optimal reconstruction of large ssTEM mosaics using TrakEM2 plugin. Schematic
of the ssTEM mosaic; each square is an individual image tile, and independent sections …

[HTML][HTML] TrackMate: An open and extensible platform for single-particle tracking

JY Tinevez, N Perry, J Schindelin, GM Hoopes… - Methods, 2017 - Elsevier
We present TrackMate, an open source Fiji plugin for the automated, semi-automated, and
manual tracking of single-particles. It offers a versatile and modular solution that works out of …

TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines

…, D Bonazzi, G Duménil, G Jacquemet, JY Tinevez - Nature …, 2022 - nature.com
… YT conceived the project; J.-YT wrote the source code; GJ, JWP, NHR, and LLB performed
the … SP, DE, SUR, and J.-YT wrote the documentation and tutorials.; GJ and J.-YT wrote the …

[HTML][HTML] Objective comparison of particle tracking methods

…, F Waharte, JY Tinevez, SL Shorte, J Willemse… - Nature …, 2014 - nature.com
Particle tracking is of key importance for quantitative analysis of intracellular dynamic
processes from time-lapse microscopy image data. Because manually detecting and following …

Role of cortical tension in bleb growth

JY Tinevez, U Schulze, G Salbreux… - Proceedings of the …, 2009 - National Acad Sciences
Blebs are spherical membrane protrusions often observed during cell migration, cell spreading,
cytokinesis, and apoptosis, both in cultured cells and in vivo. Bleb expansion is thought …

TNF and IL-1 exhibit distinct ubiquitin requirements for inducing NEMO–IKK supramolecular structures

N Tarantino, JY Tinevez, EF Crowell, B Boisson… - Journal of Cell …, 2014 - rupress.org
Nuclear factor κB (NF-κB) essential modulator (NEMO), a regulatory component of the IκB
kinase (IKK) complex, controls NF-κB activation through its interaction with ubiquitin chains. …

Polar actomyosin contractility destabilizes the position of the cytokinetic furrow

J Sedzinski, M Biro, A Oswald, JY Tinevez, G Salbreux… - Nature, 2011 - nature.com
Cytokinesis, the physical separation of daughter cells at the end of mitosis, requires precise
regulation of the mechanical properties of the cell periphery 1 , 2 . Although studies of …

Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb

C Wolff, JY Tinevez, T Pietzsch, E Stamataki, B Harich… - Elife, 2018 - elifesciences.org
10.7554/eLife.34410.001 During development, coordinated cell behaviors orchestrate tissue
and organ morphogenesis. Detailed descriptions of cell lineages and behaviors provide a …

Bringing TrackMate into the era of machine-learning and deep-learning

…, D Bonazzi, G Duménil, G Jacquemet, JY Tinevez - BioRxiv, 2021 - biorxiv.org
TrackMate is an automated tracking software used to analyze bioimages and distributed as a
Fiji plugin. Here we introduce a new version of TrackMate rewritten to improve performance …

Strategies of professional phagocytes in vivo: unlike macrophages, neutrophils engulf only surface-associated microbes

E Colucci-Guyon, JY Tinevez… - Journal of cell …, 2011 - journals.biologists.com
The early control of potentially invading microbes by our immune system primarily depends
on its main professional phagocytes – macrophages and neutrophils. Although the different …