User profiles for J. Shendure

Jay Shendure

Professor of Genome Sciences, University of Washington
Verified email at uw.edu
Cited by 118795

Exome sequencing as a tool for Mendelian disease gene discovery

…, MJ Emond, DA Nickerson, J Shendure - Nature Reviews …, 2011 - nature.com
Exome sequencing — the targeted sequencing of the subset of the human genome that is
protein coding — is a powerful and cost-effective new tool for dissecting the genetic basis of …

Target-enrichment strategies for next-generation sequencing

…, EH Turner, A Kumar, E Howard, J Shendure… - Nature …, 2010 - nature.com
We have not yet reached a point at which routine sequencing of large numbers of whole
eukaryotic genomes is feasible, and so it is often necessary to select genomic regions of interest …

[HTML][HTML] High-content CRISPR screening

…, J Moffat, LS Qi, RS Shapiro, J Shendure… - Nature Reviews …, 2022 - nature.com
CRISPR screens are a powerful source of biological discovery, enabling the unbiased
interrogation of gene function in a wide range of applications and species. In pooled CRISPR …

A general framework for estimating the relative pathogenicity of human genetic variants

…, P Jain, BJ O'roak, GM Cooper, J Shendure - Nature …, 2014 - nature.com
Current methods for annotating and interpreting human genetic variation tend to exploit a
single information type (for example, conservation) and/or are restricted in scope (for example, …

The complete genome sequence of a Neanderthal from the Altai Mountains

…, H Blanche, H Cann, JO Kitzman, J Shendure… - Nature, 2014 - nature.com
We present a high-quality genome sequence of a Neanderthal woman from Siberia. We
show that her parents were related at the level of half-siblings and that mating among close …

Next-generation DNA sequencing

J Shendure, H Ji - Nature biotechnology, 2008 - nature.com
DNA sequence represents a single format onto which a broad range of biological phenomena
can be projected for high-throughput data collection. Over the past three years, massively …

A high-coverage genome sequence from an archaic Denisovan individual

…, U Stenzel, J Dabney, J Shendure, J Kitzman… - Science, 2012 - science.org
We present a DNA library preparation method that has allowed us to reconstruct a high-coverage
(30×) genome sequence of a Denisovan, an extinct relative of Neandertals. The quality …

The contribution of de novo coding mutations to autism spectrum disorder

…, S Yoon, MC Schatz, K Ye, WR McCombie, J Shendure… - Nature, 2014 - nature.com
Whole exome sequencing has proven to be a powerful tool for understanding the genetic
architecture of human disease. Here we apply it to more than 2,500 simplex families, each …

Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations

…, MJ Rieder, DA Nickerson, R Bernier, J Shendure… - Nature, 2012 - nature.com
It is well established that autism spectrum disorders (ASD) have a strong genetic component;
however, for at least 70% of cases, the underlying genetic cause is unknown 1 . Under the …

Exome sequencing identifies the cause of a mendelian disorder

…, PT Shannon, EW Jabs, DA Nickerson, J Shendure… - Nature …, 2010 - nature.com
We demonstrate the first successful application of exome sequencing to discover the gene
for a rare mendelian disorder of unknown cause, Miller syndrome (MIM%263750). For four …