User profiles for J. Ruiz-Orera

Jorge Ruiz-Orera

MDC, Postdoctoral Researcher
Verified email at mdc-berlin.de
Cited by 1720

Evolution and implications of de novo genes in humans

LA Broeils, J Ruiz-Orera, B Snel, N Hubner… - Nature ecology & …, 2023 - nature.com
Genes and translated open reading frames (ORFs) that emerged de novo from previously
non-coding sequences provide species with opportunities for adaptation. When aberrantly …

Translation of small open reading frames: roles in regulation and evolutionary innovation

J Ruiz-Orera, MM Albà - Trends in Genetics, 2019 - cell.com
The translatome can be defined as the sum of the RNA sequences that are translated into
proteins in the cell by the ribosomal machinery. Until recently, it was generally assumed that …

Long non-coding RNAs as a source of new peptides

J Ruiz-Orera, X Messeguer, JA Subirana, MM Alba - elife, 2014 - elifesciences.org
Ruiz-Orera et al. analyzed RNA sequences collected from … Many of the lncRNAs that
Ruiz-Orera et al. investigated could … The combined findings of Ruiz-Orera et al. therefore suggest …

Standardized annotation of translated open reading frames

JM Mudge, J Ruiz-Orera, JR Prensner, MA Brunet… - Nature …, 2022 - nature.com
To the Editor—Ribosome profiling (Ribo-seq) has extended our understanding of the
translational ‘vocabulary’of the human genome, uncovering thousands of open reading frames (…

Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies

…, ER Nadelmann, M Lee, K Kanemaru, J Ruiz-Orera… - Science, 2022 - science.org
Pathogenic variants in genes that cause dilated cardiomyopathy (DCM) and arrhythmogenic
cardiomyopathy (ACM) convey high risks for the development of heart failure through …

Evolution of new proteins from translated sORFs in long non-coding RNAs

J Ruiz-Orera, JL Villanueva-Cañas, MM Albà - Experimental cell research, 2020 - Elsevier
High throughput RNA sequencing techniques have revealed that a large fraction of the
genome is transcribed into long non-coding RNAs (lncRNAs). Unlike canonical protein-coding …

[PDF][PDF] Evolutionary origins and interactomes of human, young microproteins and small peptides translated from short open reading frames

CL Sandmann, JF Schulz, J Ruiz-Orera, M Kirchner… - Molecular cell, 2023 - cell.com
All species continuously evolve short open reading frames (sORFs) that can be templated for
protein synthesis and may provide raw materials for evolutionary adaptation. We analyzed …

[HTML][HTML] Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx

…, I Erb, ML Tress, JL Rodriguez-Ales, J Ruiz-Orera… - Genome biology, 2016 - Springer
Background Genomic studies of endangered species provide insights into their evolution and
demographic history, reveal patterns of genomic erosion that might limit their viability, and …

[HTML][HTML] Origins of De Novo Genes in Human and Chimpanzee

J Ruiz-Orera, J Hernandez-Rodriguez, C Chiva… - PLoS …, 2015 - journals.plos.org
The birth of new genes is an important motor of evolutionary innovation. Whereas many new
genes arise by gene duplication, others originate at genomic regions that did not contain …

Translation of neutrally evolving peptides provides a basis for de novo gene evolution

J Ruiz-Orera, P Verdaguer-Grau… - Nature ecology & …, 2018 - nature.com
Ruiz-Orera, J. et al. Origins of de novo genes in human and chimpanzee. … & Masel, J. Young
genes are highly disordered as predicted by the preadaptation hypothesis … Jorge Ruiz-Orera