User profiles for J. Korbel

Jan Korbel

Head of Data Science, EMBL & Bridging Research Division Head, DKFZ, Heidelberg
Verified email at embl.de
Cited by 88331

[HTML][HTML] Eleven grand challenges in single-cell data science

…, TJ Lobo, EM Keizer, I Khatri, SM Kielbasa, JO Korbel… - Genome biology, 2020 - Springer
The recent boom in microfluidics and combinatorial indexing strategies, combined with low
sequencing costs, has empowered single-cell sequencing technology. Thousands—or even …

What is a gene, post-ENCODE? History and updated definition

…, JS Rozowsky, D Zheng, J Du, JO Korbel… - Genome …, 2007 - genome.cshlp.org
While sequencing of the human genome surprised us with how many protein-coding genes
there are, it did not fundamentally change our perspective on what a gene is. In contrast, the …

Toward understanding and exploiting tumor heterogeneity

…, M Elsner, M Esteller, R Fitzgerald, JO Korbel… - Nature medicine, 2015 - nature.com
The extent of tumor heterogeneity is an emerging theme that researchers are only beginning
to understand. How genetic and epigenetic heterogeneity affects tumor evolution and …

[HTML][HTML] An integrated map of structural variation in 2,504 human genomes

…, O Stegle, SE Devine, C Lee, EE Eichler, JO Korbel - Nature, 2015 - nature.com
Structural variants are implicated in numerous diseases and make up the majority of varying
nucleotides among human genomes. Here we describe an integrated set of eight structural …

Driver mutations in histone H3. 3 and chromatin remodelling genes in paediatric glioblastoma

…, A Lindroth, N Jäger, T Rausch, M Ryzhova, JO Korbel… - Nature, 2012 - nature.com
Glioblastoma multiforme (GBM) is a lethal brain tumour in adults and children. However,
DNA copy number and gene expression signatures indicate differences between adult and …

Comprehensive genomic profiles of small cell lung cancer

…, AN Karnezis, D Vaka, A Torres, MS Wang, JO Korbel… - Nature, 2015 - nature.com
We have sequenced the genomes of 110 small cell lung cancers (SCLC), one of the deadliest
human cancers. In nearly all the tumours analysed we found bi-allelic inactivation of TP53 …

DELLY: structural variant discovery by integrated paired-end and split-read analysis

…, A Schlattl, AM Stütz, V Benes, JO Korbel - …, 2012 - academic.oup.com
j are within the expected insert size range. The weight of edge e v i v j , denoted as w(e v i v j
)… mapping locations of the paired-ends p i and p j , respectively. Since this is not possible for …

Paired-end mapping reveals extensive structural variation in the human genome

JO Korbel, AE Urban, JP Affourtit, B Godwin, F Grubert… - Science, 2007 - science.org
Structural variation of the genome involves kilobase- to megabase-sized deletions, duplications,
insertions, inversions, and complex combinations of rearrangements. We introduce high…

[PDF][PDF] Severe COVID-19 is marked by a dysregulated myeloid cell compartment

…, S Kim-Hellmuth, C Klein, O Kohlbacher, JO Korbel… - Cell, 2020 - cell.com
Coronavirus disease 2019 (COVID-19) is a mild to moderate respiratory tract infection, however,
a subset of patients progress to severe disease and respiratory failure. The mechanism …

Mapping copy number variation by population-scale genome sequencing

…, ME Hurles, C Lee, SA McCarroll, JO Korbel… - Nature, 2011 - nature.com
Genomic structural variants (SVs) are abundant in humans, differing from other forms of
variation in extent, origin and functional impact. Despite progress in SV characterization, the …