User profiles for J. Kebschull

Justus Kebschull

Johns Hopkins University
Verified email at kebschull.me
Cited by 2034

Cellular barcoding: lineage tracing, screening and beyond

JM Kebschull, AM Zador - Nature methods, 2018 - nature.com
Cellular barcoding is a technique in which individual cells are labeled with unique nucleic
acid sequences, termed barcodes, so that they can be tracked through space and time. …

[HTML][HTML] Cerebellum lecture: the cerebellar nuclei—core of the cerebellum

JM Kebschull, F Casoni, GG Consalez, D Goldowitz… - The Cerebellum, 2024 - Springer
The cerebellum is a key player in many brain functions and a major topic of neuroscience
research. However, the cerebellar nuclei (CN), the main output structures of the cerebellum, …

Hyperexcitable arousal circuits drive sleep instability during aging

SB Li, VM Damonte, C Chen, GX Wang, JM Kebschull… - Science, 2022 - science.org
Sleep quality declines with age; however, the underlying mechanisms remain elusive. We
found that hyperexcitable hypocretin/orexin (Hcrt/OX) neurons drive sleep fragmentation …

[PDF][PDF] High-throughput mapping of single-neuron projections by sequencing of barcoded RNA

JM Kebschull, PG da Silva, AP Reid, ID Peikon… - Neuron, 2016 - cell.com
Neurons transmit information to distant brain regions via long-range axonal projections. In
the mouse, area-to-area connections have only been systematically mapped using bulk …

Sources of PCR-induced distortions in high-throughput sequencing data sets

JM Kebschull, AM Zador - Nucleic acids research, 2015 - academic.oup.com
… N j of molecules at cycle j. Assuming that the probability of template switching following a
collision is s 0 and s 0 ≪ 1/N j , then the total number S j of template switches on cycle j is …

The logic of single-cell projections from visual cortex

Y Han, JM Kebschull, RAA Campbell, D Cowan… - Nature, 2018 - nature.com
… i,j representing the absolute counts of barcode i in area j as previously described 30 . We
de-multiplexed the sequencing results, extracted the absolute counts of each barcode in each …

Cerebellar nuclei evolved by repeatedly duplicating a conserved cell-type set

JM Kebschull, EB Richman, N Ringach, D Friedmann… - Science, 2020 - science.org
INTRODUCTION The brains of extant animals have evolved over hundreds of millions of
years from simple circuits. Cell types diversified, connections elaborated, and new brain …

[PDF][PDF] High-throughput mapping of long-range neuronal projection using in situ sequencing

…, JM Kebschull, S Fischer, K Matho, ZJ Huang, J Gillis… - Cell, 2019 - cell.com
Understanding neural circuits requires deciphering interactions among myriad cell types
defined by spatial organization, connectivity, gene expression, and other properties. Resolving …

High-throughput sequencing of single neuron projections reveals spatial organization in the olfactory cortex

…, B Baserdem, H Zhan, Y Li, MB Davis, JM Kebschull… - Cell, 2022 - cell.com
In most sensory modalities, neuronal connectivity reflects behaviorally relevant stimulus
features, such as spatial location, orientation, and sound frequency. By contrast, the prevailing …

Toward community-driven big open brain science: open big data and tools for structure, function, and genetics

…, R Burns, SS Ghosh, JM Kebschull… - Annual review of …, 2020 - annualreviews.org
As acquiring bigger data becomes easier in experimental brain science, computational and
statistical brain science must achieve similar advances to fully capitalize on these data. …