User profiles for J. DiRuggiero

Jocelyne DiRuggiero

Johns Hopkins University
Verified email at jhu.edu
Cited by 6351

[HTML][HTML] MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis

GV Uritskiy, J DiRuggiero, J Taylor - Microbiome, 2018 - Springer
Background The study of microbiomes using whole-metagenome shotgun sequencing enables
the analysis of uncultivated microbial populations that may have important roles in their …

[HTML][HTML] A predictive model for transcriptional control of physiology in a free living cell

…, A Madar, L Suzuki, T Mori, DE Chang, J DiRuggiero… - Cell, 2007 - cell.com
The environment significantly influences the dynamic expression and assembly of all
components encoded in the genome of an organism into functional biological networks. We have …

Transitory microbial habitat in the hyperarid Atacama Desert

…, D Carrizo, L Dartnell, J DiRuggiero… - Proceedings of the …, 2018 - National Acad Sciences
Traces of life are nearly ubiquitous on Earth. However, a central unresolved question is
whether these traces always indicate an active microbial community or whether, in extreme …

Genomic sequence of hyperthermophile, Pyrococcus furiosus: implications for physiology and enzymology

FT Robb, DL Maeder, JR Brown, J DiRuggiero… - Methods in …, 2001 - Elsevier
Publisher Summary Microorganisms that are able to grow at temperatures above 90 are
called as “hyperthermophiles.” They form a diverse group consisting of autotrophic and …

[HTML][HTML] Colonization patterns of soil microbial communities in the Atacama Desert

…, AF Davila, B Jedynak, CP McKay, J DiRuggiero - Microbiome, 2013 - Springer
Background The Atacama Desert is one of the driest deserts in the world and its soil, with
extremely low moisture, organic carbon content, and oxidizing conditions, is considered to be …

Physiological responses of the halophilic archaeon Halobacterium sp. strain NRC1 to desiccation and gamma irradiation

M Kottemann, A Kish, C Iloanusi, S Bjork, J DiRuggiero - Extremophiles, 2005 - Springer
We report that the halophilic archaeon Halobacterium sp. strain NRC-1 is highly resistant to
desiccation, high vacuum and 60 Co gamma irradiation. Halobacterium sp. was able to …

Nearing the cold-arid limits of microbial life in permafrost of an upper dry valley, Antarctica

…, MM Marinova, CW Greer, J DiRuggiero… - The ISME …, 2016 - academic.oup.com
Some of the coldest and driest permafrost soils on Earth are located in the high-elevation
McMurdo Dry Valleys (MDVs) of Antarctica, but little is known about the permafrost microbial …

Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1

…, MCH Kottemann, L Hood, J DiRuggiero - Genome …, 2004 - genome.cshlp.org
We report a remarkably high UV-radiation resistance in the extremely halophilic archaeon
Halobacterium NRC-1 withstanding up to 110 J/m 2 with no loss of viability. Gene knockout …

[PDF][PDF] SnapShot: microbial extremophiles

AK Schmid, T Allers, J DiRuggiero - Cell, 2020 - cell.com
Extremophiles are remarkable examples of life's resilience, thriving in hot springs at boiling
temperatures, in brine lakes saturated with salt, and in the driest deserts. We review the …

[HTML][HTML] Applying genome-resolved metagenomics to deconvolute the halophilic microbiome

G Uritskiy, J DiRuggiero - Genes, 2019 - mdpi.com
In the past decades, the study of microbial life through shotgun metagenomic sequencing
has rapidly expanded our understanding of environmental, synthetic, and clinical microbial …