Estimating the number of species: a review

J Bunge, M Fitzpatrick - Journal of the American statistical …, 1993 - Taylor & Francis
… Suppose now that we sample n items at random from an infinite J)Opulation partitioned into
… Only rows with at least one 1 are observable; in fact, c1 = the number of rows with exactly j I 's…

[HTML][HTML] Early extracorporeal CPR for refractory out-of-hospital cardiac arrest

…, KC Bokhoven, L Mandigers, JJH Bunge… - … England Journal of …, 2023 - Mass Medical Soc
Background Extracorporeal cardiopulmonary resuscitation (CPR) restores perfusion and
oxygenation in a patient who does not have spontaneous circulation. The evidence with regard …

Estimating the number of species in microbial diversity studies

J Bunge, A Willis, F Walsh - Annual Review of Statistics and Its …, 2014 - annualreviews.org
… We are currently working on generalizing this approach from (j + 1)f j + 1 /f j being linear to
f j + 1 /f j being a ratio of polynomials. Under this extended approach, the true data structure …

Estimating the number of species in a stochastic abundance model

A Chao, J Bunge - Biometrics, 2002 - Wiley Online Library
… We compare the unknown-q case to this baseline below; for a full discussion, see Bunge
and DiCiccio (2002 unpublished manuscript). In real applications, q is unknown and must be …

[HTML][HTML] Right ventricular dysfunction during acute respiratory distress syndrome and veno-venous extracorporeal membrane oxygenation

JJH Bunge, K Caliskan, D Gommers… - Journal of thoracic …, 2018 - ncbi.nlm.nih.gov
Severe ARDS can be complicated by right ventricular (RV) failure. The etiology of RV failure
in ARDS is multifactorial. Vascular alterations, hypoxia, hypercapnia and effects of …

Polymerase chain reaction primers miss half of rRNA microbial diversity

SH Hong, J Bunge, C Leslin, S Jeon… - The ISME …, 2009 - academic.oup.com
The rRNA approach is the principal tool to study microbial diversity, but it has important biases.
These include polymerase chain reaction (PCR) primers bias, and relative inefficiency of …

Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests

…, E Lara, D Singer, J Mayor, J Bunge… - Nature ecology & …, 2017 - nature.com
High animal and plant richness in tropical rainforest communities has long intrigued naturalists.
It is unknown if similar hyperdiversity patterns are reflected at the microbial scale with …

Microbial community structure in the North Pacific ocean

MV Brown, GK Philip, JA Bunge, MC Smith… - The ISME …, 2009 - academic.oup.com
We report a ribosomal tag pyrosequencing study of the phylogenetic diversity of Archaea,
Bacteria and Eucarya over a depth profile at the Hawaii Ocean Time-Series Station, ALOHA. …

Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness

V Edgcomb, W Orsi, J Bunge, S Jeon… - The ISME …, 2011 - academic.oup.com
… To do this, we used the program CatchAll (Bunge, 2011) to compute each of five
nonparametric (Good-Turing, Chao1, ACE, ACE1 and Chao-Bunge) and eight parametric (Poisson; …

Predicting microbial species richness

SH Hong, J Bunge, SO Jeon… - Proceedings of the …, 2006 - National Acad Sciences
Microorganisms are spectacularly diverse phylogenetically, but available estimates of their
species richness are vague and problematic. For example, for comparable environments, the …