User profiles for J. Bolleman

Jerven Bolleman

Swiss Institute of Bioinformatics
Verified email at sib.swiss
Cited by 28491

Genetic variations and diseases in UniProtKB/Swiss‐Prot: The ins and outs of expert manual curation

ML Famiglietti, A Estreicher, A Gos, J Bolleman… - Human …, 2014 - Wiley Online Library
During the last few years, next‐generation sequencing (NGS) technologies have
accelerated the detection of genetic variants resulting in the rapid discovery of new disease‐associated …

The EBI RDF platform: linked open data for the life sciences

S Jupp, J Malone, J Bolleman, M Brandizi… - …, 2014 - academic.oup.com
Motivation: Resource description framework (RDF) is an emerging technology for describing,
publishing and linking life science data. As a major provider of bioinformatics data and …

Activities at the universal protein resource (UniProt)

…, MC Blatter, B Boeckmann, J Bolleman… - Nucleic acids …, 2014 - avesis.hacettepe.edu.tr
The mission of the Universal Protein Resource (UniProt) (http://www.uniprot.org) is to provide
the scientific community with a comprehensive, high-quality and freely accessible resource …

[HTML][HTML] BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

…, K Arakawa, B Aranda, J Baran, J Bolleman… - Journal of biomedical …, 2014 - Springer
The application of semantic technologies to the integration of biological data and the
interoperability of bioinformatics analysis and visualization tools has been the common theme of a …

[HTML][HTML] Interoperability and FAIRness through a novel combination of Web technologies

…, M Thompson, R Kaliyaperumal, JT Bolleman… - PeerJ Computer …, 2017 - peerj.com
Licence This is an open access article distributed under the terms of the Creative Commons
Attribution License, which permits unrestricted use, distribution, reproduction and adaptation …

Enzyme annotation in UniProtKB using Rhea

…, TB Neto, S Gehant, P Bansal, J Bolleman… - …, 2020 - academic.oup.com
Motivation To provide high quality computationally tractable enzyme annotation in UniProtKB
using Rhea, a comprehensive expert-curated knowledgebase of biochemical reactions …

[HTML][HTML] The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

…, K Arakawa, B Aranda, F Belleau, J Bolleman… - Journal of biomedical …, 2013 - Springer
Background BioHackathon 2010 was the third in a series of meetings hosted by the Database
Center for Life Sciences (DBCLS) in Tokyo, Japan. The overall goal of the BioHackathon …

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase

…, AH Auchincloss, D Baratin, J Bolleman… - …, 2020 - academic.oup.com
Motivation The number of protein records in the UniProt Knowledgebase (UniProtKB: https://www.uniprot.org
) continues to grow rapidly as a result of genome sequencing and the …

[HTML][HTML] Property graph vs RDF triple store: A comparison on glycan substructure search

D Alocci, J Mariethoz, O Horlacher, JT Bolleman… - PloS one, 2015 - journals.plos.org
Resource description framework (RDF) and Property Graph databases are emerging
technologies that are used for storing graph-structured data. We compare these technologies …

[HTML][HTML] Introducing glycomics data into the Semantic Web

KF Aoki-Kinoshita, J Bolleman, MP Campbell… - Journal of Biomedical …, 2013 - Springer
Background Glycoscience is a research field focusing on complex carbohydrates (otherwise
known as glycans) a , which can, for example, serve as “switches” that toggle between …