Structural basis of eukaryotic gene transcription
…, R Davis, J Griesenbeck, Y Lorch, JS Strattan… - FEBS …, 2005 - Wiley Online Library
An RNA polymerase II promoter has been isolated in transcriptionally activated and
repressed states. Topological and nuclease digestion analyses have revealed a dynamic …
repressed states. Topological and nuclease digestion analyses have revealed a dynamic …
The Encyclopedia of DNA elements (ENCODE): data portal update
…, SR Miyasato, TR Dreszer, JS Strattan… - Nucleic acids …, 2018 - academic.oup.com
… Additionally, the DCC has incorporated the BioDalliance Browser (12) which runs as an
embedded JavaScript object enabling us to include it in our Portal without the need to link to or …
embedded JavaScript object enabling us to include it in our Portal without the need to link to or …
ENCODE data at the ENCODE portal
…, JM Davidson, VS Malladi, JS Strattan… - Nucleic acids …, 2016 - academic.oup.com
The Encyclopedia of DNA Elements (ENCODE) Project is in its third phase of creating a
comprehensive catalog of functional elements in the human genome. This phase of the project …
comprehensive catalog of functional elements in the human genome. This phase of the project …
[PDF][PDF] Nucleosomes unfold completely at a transcriptionally active promoter
H Boeger, J Griesenbeck, JS Strattan, RD Kornberg - Molecular cell, 2003 - cell.com
It has long been known that promoter DNA is converted to a nuclease-sensitive state upon
transcriptional activation. Recent findings have raised the possibility that this conversion …
transcriptional activation. Recent findings have raised the possibility that this conversion …
New developments on the Encyclopedia of DNA Elements (ENCODE) data portal
…, C Litton, SR Miyasato, JS Strattan… - Nucleic acids …, 2020 - academic.oup.com
The Encyclopedia of DNA Elements (ENCODE) is an ongoing collaborative research project
aimed at identifying all the functional elements in the human and mouse genomes. Data …
aimed at identifying all the functional elements in the human and mouse genomes. Data …
[PDF][PDF] Removal of promoter nucleosomes by disassembly rather than sliding in vivo
H Boeger, J Griesenbeck, JS Strattan, RD Kornberg - Molecular cell, 2004 - cell.com
Previous work demonstrated the removal of nucleosomes from the PHO5 promoter upon
transcriptional activation in yeast. Removal could occur by nucleosome disassembly or by …
transcriptional activation in yeast. Removal could occur by nucleosome disassembly or by …
[HTML][HTML] An atlas of dynamic chromatin landscapes in mouse fetal development
…, A Wildberg, B Ding, B Zhang, M Wang, JS Strattan… - Nature, 2020 - nature.com
The Encyclopedia of DNA Elements (ENCODE) project has established a genomic resource
for mammalian development, profiling a diverse panel of mouse tissues at 8 developmental …
for mammalian development, profiling a diverse panel of mouse tissues at 8 developmental …
Ontology application and use at the ENCODE DCC
…, GR Roe, M Simison, CA Sloan, JS Strattan… - Database, 2015 - academic.oup.com
The Encyclopedia of DNA elements (ENCODE) project is an ongoing collaborative effort to
create a catalog of genomic annotations. To date, the project has generated over 4000 …
create a catalog of genomic annotations. To date, the project has generated over 4000 …
[HTML][HTML] The ENCODE uniform analysis pipelines
…, K Graham, P Sud, I Gabdank, JS Strattan… - Research …, 2023 - ncbi.nlm.nih.gov
The Encyclopedia of DNA elements (ENCODE) project is a collaborative effort to create a
comprehensive catalog of functional elements in the human genome. The current database …
comprehensive catalog of functional elements in the human genome. The current database …
Principles of metadata organization at the ENCODE data coordination center
…, ET Chan, JM Davidson, VS Malladi, JS Strattan… - Database, 2016 - academic.oup.com
The Encyclopedia of DNA Elements (ENCODE) Data Coordinating Center (DCC) is responsible
for organizing, describing and providing access to the diverse data generated by the …
for organizing, describing and providing access to the diverse data generated by the …