User profiles for J. M. Holton
James HoltonUCSF/LBNL/SLAC Verified email at lbl.gov Cited by 13733 |
[HTML][HTML] A beginner's guide to radiation damage
JM Holton - Journal of synchrotron radiation, 2009 - scripts.iucr.org
Many advances in the understanding of radiation damage to protein crystals, particularly at
cryogenic temperatures, have been made in recent years, but with this comes an expanding …
cryogenic temperatures, have been made in recent years, but with this comes an expanding …
Femtosecond X-ray protein nanocrystallography
…, M Bott, KE Schmidt, X Wang, I Grotjohann, JM Holton… - Nature, 2011 - nature.com
X-ray crystallography provides the vast majority of macromolecular structures, but the success
of the method relies on growing crystals of sufficient size. In conventional measurements, …
of the method relies on growing crystals of sufficient size. In conventional measurements, …
Large language models generate functional protein sequences across diverse families
Deep-learning language models have shown promise in various biotechnological applications,
including protein design and engineering. Here we describe ProGen, a language model …
including protein design and engineering. Here we describe ProGen, a language model …
Structures of the bacterial ribosome at 3.5 A resolution
We describe two structures of the intact bacterial ribosome from Escherichia coli determined
to a resolution of 3.5 angstroms by x-ray crystallography. These structures provide a …
to a resolution of 3.5 angstroms by x-ray crystallography. These structures provide a …
Accessing protein conformational ensembles using room-temperature X-ray crystallography
…, AJ Samelson, PT Lang, JM Holton… - Proceedings of the …, 2011 - National Acad Sciences
Modern protein crystal structures are based nearly exclusively on X-ray data collected at
cryogenic temperatures (generally 100 K). The cooling process is thought to introduce little bias …
cryogenic temperatures (generally 100 K). The cooling process is thought to introduce little bias …
An assessment of the resolution limitation due to radiation-damage in x-ray diffraction microscopy
X-ray diffraction microscopy (XDM) is a new form of X-ray imaging that is being practiced at
several third-generation synchrotron-radiation X-ray facilities. Nine years have elapsed since …
several third-generation synchrotron-radiation X-ray facilities. Nine years have elapsed since …
Structures of the intermediates of Kok's photosynthetic water oxidation clock
Inspired by the period-four oscillation in flash-induced oxygen evolution of photosystem II
discovered by Joliot in 1969, Kok performed additional experiments and proposed a five-state …
discovered by Joliot in 1969, Kok performed additional experiments and proposed a five-state …
Structural basis for aminoglycoside inhibition of bacterial ribosome recycling
Aminoglycosides are widely used antibiotics that cause messenger RNA decoding errors,
block mRNA and transfer RNA translocation, and inhibit ribosome recycling. Ribosome …
block mRNA and transfer RNA translocation, and inhibit ribosome recycling. Ribosome …
[PDF][PDF] The structure of the APPBP1-UBA3-NEDD8-ATP complex reveals the basis for selective ubiquitin-like protein activation by an E1
E1 enzymes initiate ubiquitin-like protein (ubl) transfer cascades by catalyzing adenylation
of the ubl's C terminus. An E1's selectivity for its cognate ubl is essential because the E1 …
of the ubl's C terminus. An E1's selectivity for its cognate ubl is essential because the E1 …
Time-resolved protein nanocrystallography using an X-ray free-electron laser
…, G Hauser, H Hirsemann, P Holl, JM Holton… - Optics express, 2012 - opg.optica.org
We demonstrate the use of an X-ray free electron laser synchronized with an optical pump
laser to obtain X-ray diffraction snapshots from the photoactivated states of large membrane …
laser to obtain X-ray diffraction snapshots from the photoactivated states of large membrane …