[HTML][HTML] An expanded evaluation of protein function prediction methods shows an improvement in accuracy

…, AE Sedeño-Cortés, P Pavlidis, S Feng, JM Cejuela… - Genome biology, 2016 - Springer
Background A major bottleneck in our understanding of the molecular underpinnings of life
is the assignment of function to proteins. While molecular experiments provide the most …

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

…, K Raja, S Subramani, J Natarajan, JM Cejuela… - Database, 2013 - academic.oup.com
In many databases, biocuration primarily involves literature curation, which usually involves
retrieving relevant articles, extracting information that will translate into annotations and …

tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles

JM Cejuela, P McQuilton, L Ponting, SJ Marygold… - Database, 2014 - academic.oup.com
The breadth and depth of biomedical literature are increasing year upon year. To keep abreast
of these increases, FlyBase, a database for Drosophila genomic and genetic information, …

[HTML][HTML] LocText: relation extraction of protein localizations to assist database curation

JM Cejuela, S Vinchurkar, T Goldberg… - BMC …, 2018 - Springer
Background The subcellular localization of a protein is an important aspect of its function.
However, the experimental annotation of locations is not even complete for well-studied model …

nala: text mining natural language mutation mentions

JM Cejuela, A Bojchevski, C Uhlig… - …, 2017 - academic.oup.com
Motivation The extraction of sequence variants from the literature remains an important task.
Existing methods primarily target standard (ST) mutation mentions (eg ‘E6V’), leaving …

[HTML][HTML] Linked annotations: a middle ground for manual curation of biomedical databases and text corpora

T Goldberg, S Vinchurkar, JM Cejuela, LJ Jensen… - BMC proceedings, 2015 - Springer
Annotators of text corpora and biomedical databases carry out the same labor-intensive task
to manually extract structured data from unstructured text. Tasks are needlessly repeated …

[PDF][PDF] Sharing annotations better: RESTful open annotation

S Pyysalo, J Campos, JM Cejuela… - Proceedings of ACL …, 2015 - aclanthology.org
Annotations are increasingly created and shared online and connected with web resources
such as databases of real-world entities. Recent collaborative efforts to provide …

M. VERGARA-BARBERÁN, H. MARTÍNEZ-PÉREZ-CEJUELA* AND JM HERRERO-MARTÍNEZ

JM HERRERO-MARTÍNEZ - Metal–Organic Frameworks in …, 2023 - books.google.com
In the last few decades, the increase of population and associated anthropogenic activities
has produced a serious impact on the environment. Concretely, urbanization and …

Creation and evaluation of a dictionary-based tagger for virus species and proteins

HV Cook, R Bērziņš, CL Rodrıguez, JM Cejuela… - BioNLP …, 2017 - aclanthology.org
ext mining automatically extracts information from the literature with the goal of making it
available for further analysis, for example by incorporating it into biomedical databases. A key …

Analysis of movement patterns by elite male players of beach volleyball

…, JJ Chinchilla, R Cejuela… - … and motor skills, 2011 - journals.sagepub.com
The aim of this study was to analyse and compare movement patterns and direction of locomotion
in professional men's beach volleyball. A quantitative analysis of beach volleyball play …