User profiles for J. C. Uyeda

Josef C Uyeda

Associate Professor, Virginia Tech
Verified email at vt.edu
Cited by 2855

[HTML][HTML] Is there room for punctuated equilibrium in macroevolution?

MW Pennell, LJ Harmon, JC Uyeda - Trends in ecology & evolution, 2014 - cell.com
The long-controversial theory of punctuated equilibrium (PE) asserts that speciation causes
rapid evolution against a backdrop of stasis. PE is currently undergoing a resurgence driven …

geiger v2. 0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees

…, JM Eastman, GJ Slater, JW Brown, JC Uyeda… - …, 2014 - academic.oup.com
Phylogenetic comparative methods are essential for addressing evolutionary hypotheses
with interspecific data. The scale and scope of such data have increased dramatically in the …

Causes and consequences of apparent timescaling across all estimated evolutionary rates

…, J Rolland, BN Sipley, JC Uyeda - Annual Review of …, 2021 - annualreviews.org
Evolutionary rates play a central role in connecting micro- and macroevolution. All
evolutionary rate estimates, including rates of molecular evolution, trait evolution, and lineage …

The million-year wait for macroevolutionary bursts

JC Uyeda, TF Hansen, SJ Arnold… - Proceedings of the …, 2011 - National Acad Sciences
We lack a comprehensive understanding of evolutionary pattern and process because short-term
and long-term data have rarely been combined into a single analytical framework. …

A novel Bayesian method for inferring and interpreting the dynamics of adaptive landscapes from phylogenetic comparative data

JC Uyeda, LJ Harmon - Systematic biology, 2014 - academic.oup.com
Our understanding of macroevolutionary patterns of adaptive evolution has greatly increased
with the advent of large-scale phylogenetic comparative methods. Widely used Ornstein–…

Comparative analysis of principal components can be misleading

JC Uyeda, DS Caetano, MW Pennell - Systematic Biology, 2015 - academic.oup.com
Most existing methods for modeling trait evolution are univariate, although researchers are
often interested in investigating evolutionary patterns and processes across multiple traits. …

Rethinking phylogenetic comparative methods

JC Uyeda, R Zenil-Ferguson, MW Pennell - Systematic Biology, 2018 - academic.oup.com
As a result of the process of descent with modification, closely related species tend to be
similar to one another in a myriad different ways. In statistical terms, this means that traits …

The evolution of energetic scaling across the vertebrate tree of life

JC Uyeda, MW Pennell, ET Miller… - The American …, 2017 - journals.uchicago.edu
… Our approach is implemented in the bayou R package (Uyeda and Harmon 2014). We
have made substantial modifications from previous versions of bayou, and an alpha release of …

Drift promotes speciation by sexual selection

JC Uyeda, SJ Arnold, PA Hohenlohe, LS Mead - Evolution, 2009 - academic.oup.com
Quantitative genetic models of sexual selection have generally failed to provide a direct
connection to speciation and to explore the consequences of finite population size. The …

[HTML][HTML] A comprehensive study of cyanobacterial morphological and ecological evolutionary dynamics through deep geologic time

JC Uyeda, LJ Harmon, CE Blank - PloS one, 2016 - journals.plos.org
Cyanobacteria have exerted a profound influence on the progressive oxygenation of Earth.
As a complementary approach to examining the geologic record—phylogenomic and trait …