User profiles for J. C. Uyeda
Josef C UyedaAssociate Professor, Virginia Tech Verified email at vt.edu Cited by 2855 |
[HTML][HTML] Is there room for punctuated equilibrium in macroevolution?
The long-controversial theory of punctuated equilibrium (PE) asserts that speciation causes
rapid evolution against a backdrop of stasis. PE is currently undergoing a resurgence driven …
rapid evolution against a backdrop of stasis. PE is currently undergoing a resurgence driven …
geiger v2. 0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees
Phylogenetic comparative methods are essential for addressing evolutionary hypotheses
with interspecific data. The scale and scope of such data have increased dramatically in the …
with interspecific data. The scale and scope of such data have increased dramatically in the …
Causes and consequences of apparent timescaling across all estimated evolutionary rates
Evolutionary rates play a central role in connecting micro- and macroevolution. All
evolutionary rate estimates, including rates of molecular evolution, trait evolution, and lineage …
evolutionary rate estimates, including rates of molecular evolution, trait evolution, and lineage …
The million-year wait for macroevolutionary bursts
We lack a comprehensive understanding of evolutionary pattern and process because short-term
and long-term data have rarely been combined into a single analytical framework. …
and long-term data have rarely been combined into a single analytical framework. …
A novel Bayesian method for inferring and interpreting the dynamics of adaptive landscapes from phylogenetic comparative data
Our understanding of macroevolutionary patterns of adaptive evolution has greatly increased
with the advent of large-scale phylogenetic comparative methods. Widely used Ornstein–…
with the advent of large-scale phylogenetic comparative methods. Widely used Ornstein–…
Comparative analysis of principal components can be misleading
Most existing methods for modeling trait evolution are univariate, although researchers are
often interested in investigating evolutionary patterns and processes across multiple traits. …
often interested in investigating evolutionary patterns and processes across multiple traits. …
Rethinking phylogenetic comparative methods
As a result of the process of descent with modification, closely related species tend to be
similar to one another in a myriad different ways. In statistical terms, this means that traits …
similar to one another in a myriad different ways. In statistical terms, this means that traits …
The evolution of energetic scaling across the vertebrate tree of life
… Our approach is implemented in the bayou R package (Uyeda and Harmon 2014). We
have made substantial modifications from previous versions of bayou, and an alpha release of …
have made substantial modifications from previous versions of bayou, and an alpha release of …
Drift promotes speciation by sexual selection
Quantitative genetic models of sexual selection have generally failed to provide a direct
connection to speciation and to explore the consequences of finite population size. The …
connection to speciation and to explore the consequences of finite population size. The …
[HTML][HTML] A comprehensive study of cyanobacterial morphological and ecological evolutionary dynamics through deep geologic time
Cyanobacteria have exerted a profound influence on the progressive oxygenation of Earth.
As a complementary approach to examining the geologic record—phylogenomic and trait …
As a complementary approach to examining the geologic record—phylogenomic and trait …