User profiles for J. C. Pires

J. Chris Pires

Colorado State University
Verified email at colostate.edu
Cited by 30405

Understanding mechanisms of novel gene expression in polyploids

TC Osborn, JC Pires, JA Birchler, DL Auger, ZJ Chen… - Trends in genetics, 2003 - cell.com
Polyploidy has long been recognized as a prominent force shaping the evolution of eukaryotes,
especially flowering plants. New phenotypes often arise with polyploid formation and …

Current perspectives and the future of domestication studies

…, FB Marshall, KM Olsen, JC Pires… - Proceedings of the …, 2014 - National Acad Sciences
It is difficult to overstate the cultural and biological impacts that the domestication of plants
and animals has had on our species. Fundamental questions regarding where, when, and …

[HTML][HTML] Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes

PP Edger, JC Pires - Chromosome Research, 2009 - Springer
Whole genome duplications (WGDs) followed by diploidization, which includes gene loss,
have been an important recurrent process in the evolution of higher eukaryotes. Gene …

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

…, CD Town, I Bancroft, X Wang, J Meng, J Ma, JC Pires… - science, 2014 - science.org
Oilseed rape (Brassica napus L.) was formed ~7500 years ago by hybridization between B.
rapa and B. oleracea, followed by chromosome doubling, a process known as allopolyploidy…

The genome of the mesopolyploid crop species Brassica rapa

…, X Li, W Hua, J Wang, X Wang, M Freeling, JC Pires… - Nature …, 2011 - nature.com
We report the annotation and analysis of the draft genome sequence of Brassica rapa accession
Chiifu-401-42, a Chinese cabbage. We modeled 41,174 protein coding genes in the B. …

[HTML][HTML] The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

…, J Wu, Q Zhou, W Wang, GJ King, JC Pires… - Nature …, 2014 - nature.com
Polyploidization has provided much genetic variation for plant adaptive evolution, but the
mechanisms by which the molecular evolution of polyploid genomes establishes genetic …

Genomic Changes in Resynthesized Brassica napus and Their Effect on Gene Expression and Phenotype

RT Gaeta, JC Pires, F Iniguez-Luy, E Leon… - The Plant …, 2007 - academic.oup.com
Many previous studies have provided evidence for genome changes in polyploids, but there
are little data on the overall population dynamics of genome change and whether it causes …

The butterfly plant arms-race escalated by gene and genome duplications

…, N Wahlberg, H Vogel, JC Pires… - Proceedings of the …, 2015 - National Acad Sciences
Coevolutionary interactions are thought to have spurred the evolution of key innovations
and driven the diversification of much of life on Earth. However, the genetic and evolutionary …

[HTML][HTML] Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea

…, C Clarke, T Bender, T Huebert, AS Mason, JC Pires… - Genome biology, 2014 - Springer
Background Brassica oleracea is a valuable vegetable species that has contributed to human
health and nutrition for hundreds of years and comprises multiple distinct cultivar groups …

Homoeologous shuffling and chromosome compensation maintain genome balance in resynthesized allopolyploid Brassica napus

Z Xiong, RT Gaeta, JC Pires - Proceedings of the National …, 2011 - National Acad Sciences
Polyploidy has contributed to the evolution of eukaryotes, particularly flowering plants. The
genomic consequences of polyploidy have been extensively studied, but the mechanisms for …