User profiles for J. C. Mu

John C. Mu

Research Engineer, Bina Technologies part of Roche Sequencing
Verified email at umnhoj.com
Cited by 938

MetaSV: an accurate and integrative structural-variant caller for next generation sequencing

M Mohiyuddin, JC Mu, J Li, N Bani Asadi… - …, 2015 - academic.oup.com
Structural variations (SVs) are large genomic rearrangements that vary significantly in size,
making them challenging to detect with the relatively short reads from next-generation …

[HTML][HTML] An ensemble approach to accurately detect somatic mutations using SomaticSeq

…, PT Afshar, A Chhibber, M Mohiyuddin, Y Fan, JC Mu… - Genome biology, 2015 - Springer
SomaticSeq is an accurate somatic mutation detection pipeline implementing a stochastic
boosting algorithm to produce highly accurate somatic mutation calls for both single …

[HTML][HTML] Mutation of a U2 snRNA gene causes global disruption of alternative splicing and neurodegeneration

Y Jia, JC Mu, SL Ackerman - Cell, 2012 - cell.com
Although uridine-rich small nuclear RNAs (U-snRNAs) are essential for pre-mRNA splicing,
little is known regarding their function in the regulation of alternative splicing or of the …

VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications

JC Mu, M Mohiyuddin, J Li, N Bani Asadi… - …, 2015 - academic.oup.com
VarSim is a framework for assessing alignment and variant calling accuracy in high-throughput
genome sequencing through simulation or real data. In contrast to simulating a random …

Silsesquioxanes: Part I: A key intermediate in the building of molecular composite materials

A Provatas, M Luft, JC Mu, AH White… - Journal of …, 1998 - Elsevier
A high yield synthesis for octakis(hydrodimethylsiloxy)octasilsesquioxane, [Si 8 O 12 ](OSi(CH
3 ) 2 H) 8 , a key building block for making new molecular composites, and highly …

Fast and accurate read alignment for resequencing

JC Mu, H Jiang, A Kiani, M Mohiyuddin… - …, 2012 - academic.oup.com
Mu, Hui Jiang and Wing H. Wong were partially supported by National Institutes of Health
grants … Mu partially completed the work as an intern at Bina. Hui Jiang and Wing H. Wong are …

LongISLND: in silico sequencing of lengthy and noisy datatypes

B Lau, M Mohiyuddin, JC Mu, LT Fang… - …, 2016 - academic.oup.com
LongISLND is a software package designed to simulate sequencing data according to the
characteristics of third generation, single-molecule sequencing technologies. The general …

Sandwich-like Co3O4/graphene nanocomposites as anode material for lithium ion batteries

JC Mu, EQ Wang, YL Zhang… - Journal of Nanoscience …, 2019 - ingentaconnect.com
In this work, sandwich-like Co3O4/graphene nanocomposites were synthesized by a facile
hydrothermal process and subsequent thermal treatment. X-ray diffraction and scanning …

[HTML][HTML] Pd nanoparticles immobilized on MIL-53 (Al) as highly effective bifunctional catalysts for oxidation of liquid methanol to methyl formate

JF Liu, JC Mu, RX Qin, SF Ji - Petroleum Science, 2019 - Springer
A series of Pd/MIL-53(Al) heterogeneous bifunctional catalysts with different Pd contents
were prepared by an impregnation method. The prepared metal–organic frameworks MIL-53(Al…

Design of rate-compatible protograph-based LDPC codes with mixed circulants

Y Xie, JC Mu, J Yuan - … Symposium on Turbo Codes & Iterative …, 2010 - ieeexplore.ieee.org
We propose a novel design of rate-compatible protograph-based low-density parity-check
code families that can cover a wide range of code rates. In contrast to traditional method of …