User profiles for I. Cortes-Ciriano

Isidro Cortés Ciriano

EMBL-EBI
Verified email at ebi.ac.uk
Cited by 14858

[PDF][PDF] Comprehensive characterization of cancer driver genes and mutations

…, C Rubio-Perez, N Nagarajan, I Cortés-Ciriano… - Cell, 2018 - cell.com
Identifying molecular cancer drivers is critical for precision oncology. Multiple advanced
algorithms to identify drivers now exist, but systematic attempts to combine and optimize them on …

[HTML][HTML] Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing

I Cortés-Ciriano, JJK Lee, R Xi, D Jain, YL Jung… - Nature …, 2020 - nature.com
Chromothripsis is a mutational phenomenon characterized by massive, clustered genomic
rearrangements that occurs in cancer and other diseases. Recent studies in selected cancer …

[HTML][HTML] Artificial intelligence in drug discovery: what is realistic, what are illusions? Part 1: Ways to make an impact, and why we are not there yet

A Bender, I Cortés-Ciriano - Drug discovery today, 2021 - Elsevier
… and Cortes-Ciriano, I. Artificial intelligence in drug discovery: what is realistic, what are
illusions? Part 2: A discussion of chemical and biological data used for AI in drug discovery. …

[PDF][PDF] Perspective on oncogenic processes at the end of the beginning of cancer genomics

…, K Huang, C Tokheim, I Cortés-Ciriano… - Cell, 2018 - cell.com
The Cancer Genome Atlas (TCGA) has catalyzed systematic characterization of diverse
genomic alterations underlying human cancers. At this historic junction marking the completion …

[PDF][PDF] Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer

…, AY Warren, MGB Tran, GD Stewart, I Cortés-Ciriano… - Cancer Cell, 2022 - cell.com
Tumor behavior is intricately dependent on the oncogenic properties of cancer cells and
their multi-cellular interactions. To understand these dependencies within the wider …

[HTML][HTML] ERα-associated translocations underlie oncogene amplifications in breast cancer

…, H Jin, VV Viswanadham, EV Watson, I Cortés-Ciriano… - Nature, 2023 - nature.com
Focal copy-number amplification is an oncogenic event. Although recent studies have revealed
the complex structure 1 , 2 – 3 and the evolutionary trajectories 4 of oncogene amplicons…

Computational analysis of cancer genome sequencing data

I Cortés-Ciriano, DC Gulhan, JJK Lee… - Nature Reviews …, 2022 - nature.com
Distilling biologically meaningful information from cancer genome sequencing data requires
comprehensive identification of somatic alterations using rigorous computational methods. …

[HTML][HTML] Polypharmacology modelling using proteochemometrics (PCM): recent methodological developments, applications to target families, and future prospects

I Cortés-Ciriano, QU Ain, V Subramanian… - …, 2015 - pubs.rsc.org
Proteochemometric (PCM) modelling is a computational method to model the bioactivity of
multiple ligands against multiple related protein targets simultaneously. Hence it has been …

Mechanisms and therapeutic implications of hypermutation in gliomas

…, LF Spurr, JB Iorgulescu, CL Bohrson, I Cortes-Ciriano… - Nature, 2020 - nature.com
A high tumour mutational burden (hypermutation) is observed in some gliomas 1 , 2 , 3 , 4 –
5 ; however, the mechanisms by which hypermutation develops and whether it predicts the …

[HTML][HTML] Genomic footprints of activated telomere maintenance mechanisms in cancer

…, B Hutter, DM Braun, I Cortés-Ciriano… - Nature …, 2020 - nature.com
Cancers require telomere maintenance mechanisms for unlimited replicative potential. They
achieve this through TERT activation or alternative telomere lengthening associated with …