User profiles for H. Bolouri

Hamid Bolouri

Benaroya Research Institute
Verified email at BenaroyaResearch.org
Cited by 17260

A genomic regulatory network for development

…, RA Cameron, DR McClay, L Hood, H Bolouri - science, 2002 - science.org
Development of the body plan is controlled by large networks of regulatory genes. A gene
regulatory network that controls the specification of endoderm and mesoderm in the sea …

SBML Level 3: an extensible format for the exchange and reuse of biological models

…, HM Sauro, B Palsson, H Bolouri, H Kitano… - Molecular systems …, 2020 - embopress.org
Abstract Systems biology has experienced dramatic growth in the number, size, and
complexity of computational models. To reproduce simulation results and reuse models, …

Modeling transcriptional regulatory networks

H Bolouri, EH Davidson - BioEssays, 2002 - Wiley Online Library
Developmental processes in complex animals are directed by a hardwired genomic regulatory
code, the ultimate function of which is to set up a progression of transcriptional regulatory …

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

…, HM Sauro, H Bolouri, JC Doyle, H Kitano… - …, 2003 - academic.oup.com
… Brown,CT, Rust,AG, Clarke,PJC, Pan,Z., Schilstra,MJ, De Buysshcher,T., Griffin,G., Wold,BJ,
Cameron,RA, Davidson,EH and Bolouri,H. (2002) New computational approaches for …

Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene

CH Yuh, H Bolouri, EH Davidson - Science, 1998 - science.org
The genomic regulatory network that controls gene expression ultimately determines form
and function in each species. The operational nature of the regulatory programming specified …

Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4

…, B Li, AG Rust, M Korb, K Kennedy, T Hai, H Bolouri… - Nature, 2006 - nature.com
h of LPS stimulation, and this binding declined after 2 h. ATF3 binding occurred more slowly,
with maximal binding at 4 h… not decline, and remained constant at 6 h (Fig. 3a). The binding …

Substantial interindividual and limited intraindividual genomic diversity among tumors from men with metastatic prostate cancer

…, X Zhang, LD True, R Gulati, R Etzioni, H Bolouri… - Nature medicine, 2016 - nature.com
Tumor heterogeneity may reduce the efficacy of molecularly guided systemic therapy for
cancers that have metastasized. To determine whether the genomic alterations in a single …

The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions

H Bolouri, JE Farrar, T Triche Jr, RE Ries, EL Lim… - Nature medicine, 2018 - nature.com
We present the molecular landscape of pediatric acute myeloid leukemia (AML) and
characterize nearly 1,000 participants in Children's Oncology Group (COG) AML trials. The COG–…

[BOOK][B] Computational modeling of genetic and biochemical networks

JM Bower, H Bolouri - 2001 - books.google.com
… Completion and analysis of the DNA sequence of the first model organism, H. influenza,
marked the end of our innocence; similarly, entry into the contemporary high throughput era, …