Shifting the limits in wheat research and breeding using a fully annotated reference genome
…, H Šimková, T Wicker, D Swarbreck, H Rimbert… - Science, 2018 - science.org
INTRODUCTION Wheat (Triticum aestivum L.) is the most widely cultivated crop on Earth,
contributing about a fifth of the total calories consumed by humans. Consequently, wheat …
contributing about a fifth of the total calories consumed by humans. Consequently, wheat …
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
…, Z Dubská, J Vrana, R Šperková, H Šimková… - Science, 2014 - science.org
An ordered draft sequence of the 17-gigabase hexaploid bread wheat (Triticum aestivum)
genome has been produced by sequencing isolated chromosome arms. We have annotated …
genome has been produced by sequencing isolated chromosome arms. We have annotated …
[HTML][HTML] Chromosomes in the flow to simplify genome analysis
…, J Šafář, J Bartoš, M Kubaláková, H Šimková - Functional & integrative …, 2012 - Springer
Nuclear genomes of human, animals, and plants are organized into subunits called
chromosomes. When isolated into aqueous suspension, mitotic chromosomes can be classified …
chromosomes. When isolated into aqueous suspension, mitotic chromosomes can be classified …
[HTML][HTML] A chromosome conformation capture ordered sequence of the barley genome
…, M Groth, M Felder, A Hastie, H Šimková, H Staňková… - Nature, 2017 - nature.com
Cereal grasses of the Triticeae tribe have been the major food source in temperate regions
since the dawn of agriculture. Their large genomes are characterized by a high content of …
since the dawn of agriculture. Their large genomes are characterized by a high content of …
Ancient hybridizations among the ancestral genomes of bread wheat
…, Z Dubská, J Vrána, R Šperková, H Šimková… - science, 2014 - science.org
The allohexaploid bread wheat genome consists of three closely related subgenomes (A, B,
and D), but a clear understanding of their phylogenetic history has been lacking. We used …
and D), but a clear understanding of their phylogenetic history has been lacking. We used …
Unlocking the barley genome by chromosomal and comparative genomics
…, M Martis, PE Hedley, H Šimková, H Liu… - The Plant …, 2011 - academic.oup.com
… We show that the barley (H) genome displays a mosaic of structural similarity to hexaploid
bread wheat (Triticum aestivum) A, B, and D subgenomes and that orthologous genes in …
bread wheat (Triticum aestivum) A, B, and D subgenomes and that orthologous genes in …
Long-read sequence assembly: a technical evaluation in barley
…, CJ Pozniak, AG Sharpe, H Šimková… - The Plant …, 2021 - academic.oup.com
Sequence assembly of large and repeat-rich plant genomes has been challenging, requiring
substantial computational resources and often several complementary sequence assembly …
substantial computational resources and often several complementary sequence assembly …
[HTML][HTML] Advances in plant chromosome genomics
…, P Cápal, M Kubaláková, V Burešová, H Šimková - Biotechnology …, 2014 - Elsevier
… Frontier (2n = 2x = 16) forms seven peaks, six of which each represent a single chromosome
(A–C and F–H). The seventh peak harbors both chromosomes D and E. (B) In the wheat cv. …
(A–C and F–H). The seventh peak harbors both chromosomes D and E. (B) In the wheat cv. …
[HTML][HTML] The wheat powdery mildew genome shows the unique evolution of an obligate biotroph
… distinguish three different H old haplogroups, whereas in about 25% of the genome four
different H old haplogroups were present. All four isolates shared the H young haplogroup in …
different H old haplogroups were present. All four isolates shared the H young haplogroup in …
Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives
…, M Martis, B Steuernagel, U Scholz, H Šimková… - The Plant …, 2011 - academic.oup.com
All six arms of the group 1 chromosomes of hexaploid wheat (Triticum aestivum) were
sequenced with Roche/454 to 1.3- to 2.2-fold coverage and compared with similar data sets from …
sequenced with Roche/454 to 1.3- to 2.2-fold coverage and compared with similar data sets from …