User profiles for H. M. Bik

Holly Bik

Department of Marine Science & Institute of Bioinformatics, University of Georgia
Verified email at uga.edu
Cited by 6221

Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

K Deiner, HM Bik, E Mächler, M Seymour… - Molecular …, 2017 - Wiley Online Library
The genomic revolution has fundamentally changed how we survey biodiversity on earth.
High‐throughput sequencing (“ HTS ”) platforms now enable the rapid sequencing of DNA …

Sequencing our way towards understanding global eukaryotic biodiversity

HM Bik, DL Porazinska, S Creer, JG Caporaso… - Trends in ecology & …, 2012 - cell.com
Microscopic eukaryotes are abundant, diverse and fill critical ecological roles across every
ecosystem on Earth, yet there is a well-recognized gap in understanding of their global …

The ecologist's field guide to sequence‐based identification of biodiversity

…, WK Thomas, C Potter, HM Bik - Methods in ecology …, 2016 - Wiley Online Library
… a) Alpha diversity displayed as taxonomy bar charts, showing relative abundance of taxa
across samples using the Phinch data visualization framework (Bik & Pitch Interactive 2014). b) …

[HTML][HTML] An introduction to social media for scientists

HM Bik, MC Goldstein - PLoS biology, 2013 - journals.plos.org
… * E-mail: holly.bik@gmail.com … Citation: Bik HM, Goldstein MC (2013) An Introduction
to Social Media for Scientists. PLoS Biol 11(4): e1001535. https://doi.org/10.1371/journal.pbio.1001535 …

[HTML][HTML] PhyloSift: phylogenetic analysis of genomes and metagenomes

AE Darling, G Jospin, E Lowe, FA Matsen IV, HM Bik… - PeerJ, 2014 - peerj.com
Like all organisms on the planet, environmental microbes are subject to the forces of molecular
evolution. Metagenomic sequencing provides a means to access the DNA sequence of …

[HTML][HTML] Microbiota of the indoor environment: a meta-analysis

RI Adams, AC Bateman, HM Bik, JF Meadow - Microbiome, 2015 - Springer
Background As modern humans, we spend the majority of our time in indoor environments.
Consequently, environmental exposure to microorganisms has important implications for …

[HTML][HTML] Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms

…, M De Bruyn, F Edwards, BA Emmett, HM Bik… - Communications …, 2018 - nature.com
Accurate quantification of biodiversity is fundamental to understanding ecosystem function
and for environmental assessment. Molecular methods using environmental DNA (eDNA) …

[HTML][HTML] Dramatic shifts in benthic microbial eukaryote communities following the Deepwater Horizon oil spill

HM Bik, KM Halanych, J Sharma, WK Thomas - PloS one, 2012 - journals.plos.org
Benthic habitats harbour a significant (yet unexplored) diversity of microscopic eukaryote
taxa, including metazoan phyla, protists, algae and fungi. These groups are thought to …

Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep‐sea and shallow water sediments

HM Bik, WAY Sung, P De Ley, JG Baldwin… - Molecular …, 2012 - Wiley Online Library
Microbial eukaryotes (nematodes, protists, fungi, etc., loosely referred to as meiofauna) are
ubiquitous in marine sediments and probably play pivotal roles in maintaining ecosystem …

[HTML][HTML] Host-associated microbiomes drive structure and function of marine ecosystems

…, A O'Dea, B Yuen, RS Peixoto, TJ Pereira, HM Bik… - PLoS …, 2019 - journals.plos.org
The significance of symbioses between eukaryotic hosts and microbes extends from the
organismal to the ecosystem level and underpins the health of Earth’s most threatened marine …