Leveraging transcript quantification for fast computation of alternative splicing profiles
GP Alamancos, A Pagès, JL Trincado, N Bellora… - Rna, 2015 - rnajournal.cshlp.org
Alternative splicing plays an essential role in many cellular processes and bears major
relevance in the understanding of multiple diseases, including cancer. High-throughput RNA …
relevance in the understanding of multiple diseases, including cancer. High-throughput RNA …
Methods to study splicing from high-throughput RNA sequencing data
The development of novel high-throughput sequencing (HTS) methods for RNA (RNA-Seq)
has provided a very powerful mean to study splicing under multiple conditions at …
has provided a very powerful mean to study splicing under multiple conditions at …
SUPPA: a super-fast pipeline for alternative splicing analysis from RNA-Seq
GP Alamancos, A Pagès, JL Trincado, N Bellora… - bioRxiv, 2014 - biorxiv.org
High-throughput RNA sequencing allows genome-wide analyses of pre-mRNA splicing
across multiple conditions. However, the increasing number of available datasets represents a …
across multiple conditions. However, the increasing number of available datasets represents a …
Basal ganglia output controls active avoidance behavior
…, G Vega-Flores, MA Castro-Alamancos - Journal of …, 2016 - Soc Neuroscience
Engrained avoidance behavior is highly adaptive when it keeps away harmful events and
can be highly maladaptive when individuals elude harmless situations in anxiety disorders, …
can be highly maladaptive when individuals elude harmless situations in anxiety disorders, …
Bidirectional control of orienting behavior by the substantia nigra pars reticulata: distinct significance of head and whisker movements
Detection of an unexpected, novel, or salient stimulus typically leads to an orienting response
by which animals move the head, in concert with the sensors (eg, eyes, pinna, whiskers), …
by which animals move the head, in concert with the sensors (eg, eyes, pinna, whiskers), …
Basal ganglia output has a permissive non-driving role in a signaled locomotor action mediated by the midbrain
…, MA Castro-Alamancos - Journal of …, 2021 - Soc Neuroscience
The basal ganglia are important for movement and reinforcement learning. Using mice of
either sex, we found that the main basal ganglia GABAergic output in the midbrain, the …
either sex, we found that the main basal ganglia GABAergic output in the midbrain, the …
Skilled motor learning does not enhance long-term depression in the motor cortex in vivo
…, MA Castro-Alamancos - Journal of …, 2005 - journals.physiology.org
Learning of motor skills may occur as a consequence of changes in the efficacy of synaptic
connections in the primary motor cortex. We investigated if learning in a reaching task affects …
connections in the primary motor cortex. We investigated if learning in a reaching task affects …
[CITATION][C] Spliceosomal Pre-mRNA Splicing
GP Alamancos, E Agirre, E Eyras, KJ Hertel - Methods and Protocols. Methods Mol …, 2014
[CITATION][C] Methods to Study Splicing from RNA-Seq
E Eyras, GP Alamancos, E Agirre - URL http://figshare. com/articles …, 2013
[CITATION][C] SUPPA: a super-fast pipeline for alternative splicing analysis from RNA-Seq. bioRxiv, 008763
GP Alamancos, A Pagès, JL Trincado, N Bellora… - 2014