Leveraging transcript quantification for fast computation of alternative splicing profiles

GP Alamancos, A Pagès, JL Trincado, N Bellora… - Rna, 2015 - rnajournal.cshlp.org
Alternative splicing plays an essential role in many cellular processes and bears major
relevance in the understanding of multiple diseases, including cancer. High-throughput RNA …

Methods to study splicing from high-throughput RNA sequencing data

GP Alamancos, E Agirre, E Eyras - Spliceosomal Pre-mRNA Splicing …, 2014 - Springer
The development of novel high-throughput sequencing (HTS) methods for RNA (RNA-Seq)
has provided a very powerful mean to study splicing under multiple conditions at …

SUPPA: a super-fast pipeline for alternative splicing analysis from RNA-Seq

GP Alamancos, A Pagès, JL Trincado, N Bellora… - bioRxiv, 2014 - biorxiv.org
High-throughput RNA sequencing allows genome-wide analyses of pre-mRNA splicing
across multiple conditions. However, the increasing number of available datasets represents a …

Basal ganglia output controls active avoidance behavior

…, G Vega-Flores, MA Castro-Alamancos - Journal of …, 2016 - Soc Neuroscience
Engrained avoidance behavior is highly adaptive when it keeps away harmful events and
can be highly maladaptive when individuals elude harmless situations in anxiety disorders, …

Bidirectional control of orienting behavior by the substantia nigra pars reticulata: distinct significance of head and whisker movements

S Hormigo, J Zhou, MA Castro-Alamancos - Eneuro, 2021 - eneuro.org
Detection of an unexpected, novel, or salient stimulus typically leads to an orienting response
by which animals move the head, in concert with the sensors (eg, eyes, pinna, whiskers), …

Basal ganglia output has a permissive non-driving role in a signaled locomotor action mediated by the midbrain

…, MA Castro-Alamancos - Journal of …, 2021 - Soc Neuroscience
The basal ganglia are important for movement and reinforcement learning. Using mice of
either sex, we found that the main basal ganglia GABAergic output in the midbrain, the …

Skilled motor learning does not enhance long-term depression in the motor cortex in vivo

…, MA Castro-Alamancos - Journal of …, 2005 - journals.physiology.org
Learning of motor skills may occur as a consequence of changes in the efficacy of synaptic
connections in the primary motor cortex. We investigated if learning in a reaching task affects …

[CITATION][C] Spliceosomal Pre-mRNA Splicing

GP Alamancos, E Agirre, E Eyras, KJ Hertel - Methods and Protocols. Methods Mol …, 2014

[CITATION][C] Methods to Study Splicing from RNA-Seq

E Eyras, GP Alamancos, E Agirre - URL http://figshare. com/articles …, 2013

[CITATION][C] SUPPA: a super-fast pipeline for alternative splicing analysis from RNA-Seq. bioRxiv, 008763

GP Alamancos, A Pagès, JL Trincado, N Bellora… - 2014