User profiles for G. J. Barton

Geoffrey J Barton

Professor of Bioinformatics, University of Dundee
Verified email at dundee.ac.uk
Cited by 40641

Emerging roles of pseudokinases

J Boudeau, D Miranda-Saavedra, GJ Barton… - Trends in cell …, 2006 - cell.com
Kinases control virtually all aspects of biology. Forty-eight human proteins have a kinase-like
domain that lacks at least one of the conserved catalytic residues; these proteins are …

Jalview Version 2—a multiple sequence alignment editor and analysis workbench

…, JB Procter, DMA Martin, M Clamp, GJ Barton - …, 2009 - academic.oup.com
Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of
multiple sequence alignments. Core features include keyboard and mouse-based editing, …

A structural analysis of phosphate and sulphate binding sites in proteins: estimation of propensities for binding and conservation of phosphate binding sites

RR Copley, GJ Barton - Journal of molecular biology, 1994 - Elsevier
The high resolution X-ray structures of 38 proteins that bind phosphate containing groups
and 36 proteins binding sulphate ions were analysed to characterise the structural features of …

The Jpred 3 secondary structure prediction server

C Cole, JD Barber, GJ Barton - Nucleic acids research, 2008 - academic.oup.com
… The details of Jnet v2.0 will be described elsewhere (Cole and Barton, manuscript submitted
for publication) but follow similar lines to Jnet v1.0 ( 20 ). The main differences in Jnet v2.0 …

[PDF][PDF] ALSCRIPT: a tool to format multiple sequence alignments

GJ Barton - Protein Engineering Design and Selection, 1993 - Citeseer
… For example, the AMAS (Analysis of Multiply Aligned Sequences; CD Livingstone and GJBarton,
in preparation) system, which highlights structurally important regions of a multiple …

JPred4: a protein secondary structure prediction server

…, C Cole, J Procter, GJ Barton - Nucleic acids …, 2015 - academic.oup.com
JPred4 ( http://www.compbio.dundee.ac.uk/jpred4 ) is the latest version of the popular JPred
protein secondary structure prediction server which provides predictions by the JNet …

JPred: a consensus secondary structure prediction server.

…, AS Siddiqui, M Finlay, GJ Barton - Bioinformatics (Oxford …, 1998 - academic.oup.com
… In order to perform a recent large-scale comparative analysis of secondary structure
prediction algorithms (Cuff and Barton, 1998), we developed flexible software to standardise the …

The jalview java alignment editor

M Clamp, J Cuff, SM Searle, GJ Barton - Bioinformatics, 2004 - academic.oup.com
Multiple sequence alignment remains a crucial method for understanding the function of
groups of related nucleic acid and protein sequences. However, it is known that automatic …

Application of multiple sequence alignment profiles to improve protein secondary structure prediction

JA Cuff, GJ Barton - Proteins: Structure, Function, and …, 2000 - Wiley Online Library
The effect of training a neural network secondary structure prediction algorithm with different
types of multiple sequence alignment profiles derived from the same sequences, is shown …

Draft Genome Sequence of the Sexually Transmitted Pathogen Trichomonas vaginalis

…, Y Van de Peer, D Miranda-Saavedra, GJ Barton… - Science, 2007 - science.org
We describe the genome sequence of the protist Trichomonas vaginalis, a sexually transmitted
human pathogen. Repeats and transposable elements comprise about two-thirds of the …