User profiles for G. E. Zentner

Gabriel E. Zentner

Associate Director of Computational Genomics, eGenesis
Verified email at egenesisbio.com
Cited by 4996

Regulation of nucleosome dynamics by histone modifications

GE Zentner, S Henikoff - Nature structural & molecular biology, 2013 - nature.com
Chromatin is a dynamic structure that must respond to myriad stimuli to regulate access to
DNA, and chemical modification of histones is a major means by which the cell modulates …

Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions

GE Zentner, PJ Tesar, PC Scacheri - Genome research, 2011 - genome.cshlp.org
Epigenetic regulation of gene enhancer elements is important for establishing and maintaining
the identity of cells. Gene enhancer elements are thought to exist in either active or …

Molecular and phenotypic aspects of CHD7 mutation in CHARGE syndrome

GE Zentner, WS Layman, DM Martin… - American journal of …, 2010 - Wiley Online Library
Molecular and phenotypic aspects of CHD7 mutation in CHARGE syndrome - Zentner - 2010
… How to cite this article: Zentner GE, Layman WS, Martin DM, Scacheri PC. 2010. Molecular …

Genomic distribution of CHD7 on chromatin tracks H3K4 methylation patterns

…, K Shastri, D Balasubramanian, GE Zentner… - Genome …, 2009 - genome.cshlp.org
CHD7 is a member of the chromodomain helicase DNA binding domain family of ATP-dependent
chromatin remodeling enzymes. De novo mutation of the CHD7 gene is a major cause …

[HTML][HTML] Design and testing of a humanized porcine donor for xenotransplantation

…, WT Serkin, K Stiede, T Tomosugi, Y Xue, GE Zentner… - Nature, 2023 - nature.com
Recent human decedent model studies 1 , 2 and compassionate xenograft use 3 have explored
the promise of porcine organs for human transplantation. To proceed to human studies, …

High-resolution mapping of transcription factor binding sites on native chromatin

S Kasinathan, GA Orsi, GE Zentner, K Ahmad… - Nature …, 2014 - nature.com
Sequence-specific DNA-binding proteins including transcription factors (TFs) are key determinants
of gene regulation and chromatin architecture. TF profiling is commonly carried out by …

[HTML][HTML] Epigenomic comparison reveals activation of “seed” enhancers during transition from naive to primed pluripotency

DC Factor, O Corradin, GE Zentner, A Saiakhova… - Cell stem cell, 2014 - cell.com
Naive mouse embryonic stem cells (mESCs) and primed epiblast stem cells (mEpiSCs)
represent successive snapshots of pluripotency during embryogenesis. Using transcriptomic and …

Integrative genomic analysis of human ribosomal DNA

GE Zentner, A Saiakhova, P Manaenkov… - Nucleic acids …, 2011 - academic.oup.com
The transcription of ribosomal RNA (rRNA) is critical to life. Despite its importance, ribosomal
DNA (rDNA) is not included in current genome assemblies and, consequently, genomic …

CTCF mediates chromatin looping via N-terminal domain-dependent cohesin retention

…, AV Strunnikov, GE Zentner… - Proceedings of the …, 2020 - National Acad Sciences
The DNA-binding protein CCCTC-binding factor (CTCF) and the cohesin complex function
together to shape chromatin architecture in mammalian cells, but the molecular details of this …

[HTML][HTML] ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo

GE Zentner, S Kasinathan, B Xin, R Rohs… - Nature …, 2015 - nature.com
Chromatin endogenous cleavage (ChEC) uses fusion of a protein of interest to micrococcal
nuclease (MNase) to target calcium-dependent cleavage to specific genomic loci in vivo. …