User profiles for F. Jug

Florian Jug

Fondatione Human Technopole
Verified email at fht.org
Cited by 5519

[HTML][HTML] Cell segmentation methods for label-free contrast microscopy: review and comprehensive comparison

T Vicar, J Balvan, J Jaros, F Jug, R Kolar, M Masarik… - BMC …, 2019 - Springer
… where d is PSF (in general a directional first-derivative-of-Gaussian kernel, but simple
difference without Gaussian is used for simplification), g is acquired image and f is original image. …

[HTML][HTML] Democratising deep learning for microscopy with ZeroCostDL4Mic

…, LA Royer, C Leterrier, Y Shechtman, F Jug… - Nature …, 2021 - nature.com
Deep Learning (DL) methods are powerful analytical tools for microscopy and can outperform
conventional image processing pipelines. Despite the enthusiasm and innovations fuelled …

Content-aware image restoration: pushing the limits of fluorescence microscopy

…, M Solimena, J Rink, P Tomancak, L Royer, F Jug… - Nature …, 2018 - nature.com
Fluorescence microscopy is a key driver of discoveries in the life sciences, with observable
phenomena being limited by the optics of the microscope, the chemistry of the fluorophores, …

Noise2void-learning denoising from single noisy images

A Krull, TO Buchholz, F Jug - Proceedings of the IEEE/CVF …, 2019 - openaccess.thecvf.com
… (f) Result of our N2V trained network. Both networks are not able to preserve the grainy
structure of the image, but the N2V trained network loses more high-frequency detail. …

An objective comparison of cell-tracking algorithms

…, P Quelhas, Ö Demirel, L Malmström, F Jug… - Nature …, 2017 - nature.com
… The final CT value for a particular video is computed as the F 1 score of completely … The
final BC(i) value for a particular video is computed as the F 1 score of correctly reconstructed …

Content-aware image restoration for electron microscopy

…, A Krull, R Shahidi, G Pigino, G Jékely, F Jug - Methods in cell …, 2019 - Elsevier
Multiple approaches to use deep neural networks for image restoration have recently been
proposed. Training such networks requires well registered pairs of high and low-quality …

[HTML][HTML] LABKIT: labeling and segmentation toolkit for big image data

…, D Schmidt, P Tomancak, R Haase, F Jug - Frontiers in computer …, 2022 - frontiersin.org
We present Labkit, a user-friendly Fiji plugin for the segmentation of microscopy image data.
It offers easy to use manual and automated image segmentation routines that can be rapidly …

ClearVolume: open-source live 3D visualization for light-sheet microscopy

LA Royer, M Weigert, U Günther, N Maghelli, F Jug… - Nature …, 2015 - nature.com
To the Editor: Current state-of-the-art light-sheet microscopes rely on sophisticated control
software to perform the acquisition of gigabytes of image data per second over the course of …

[HTML][HTML] Probabilistic noise2void: Unsupervised content-aware denoising

…, T Vičar, M Prakash, M Lalit, F Jug - Frontiers in Computer …, 2020 - frontiersin.org
… FCN based image denoising in fact implements f(x) by producing independent predictions
s ^ i = g ( x RF ( i ) ; θ ) ≈ s i for each pixel i, depending only on x RF(i) instead of on the entire …

[HTML][HTML] Differential lateral and basal tension drive folding of Drosophila wing discs through two distinct mechanisms

…, N Dye, S Eaton, F Jug, EW Myers, F Jülicher… - Nature …, 2018 - nature.com
… We then quantified the cross correlation between changes in F-actin intensity and cell height,
and found a negative peak for a time lag around 22 s, indicating that an increase in lateral F