[HTML][HTML] 4C-ker: a method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments

…, ER Miraldi, S Badri, Y Fu, E Swanzey… - PLoS computational …, 2016 - journals.plos.org
4C-Seq has proven to be a powerful technique to identify genome-wide interactions with a
single locus of interest (or “bait”) that can be important for gene regulation. However, analysis …

[HTML][HTML] Mouse genetic reference populations: cellular platforms for integrative systems genetics

E Swanzey, C O'Connor, LG Reinholdt - Trends in Genetics, 2021 - cell.com
Interrogation of disease-relevant cellular and molecular traits exhibited by genetically diverse
cell populations enables in vitro systems genetics approaches for uncovering the basic …

[HTML][HTML] Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate

R Raviram, PP Rocha, VM Luo, E Swanzey, ER Miraldi… - Genome biology, 2018 - Springer
e The left plot shows the number of annotated integrations in the mm10 genome for each
ERV (annotated), the number of predicted integrations and the number of observed bait-like …

[PDF][PDF] A damage-independent role for 53BP1 that impacts break order and Igh architecture during class switch recombination

…, Y Fu, JH Kim, VM Luo, A Aljoufi, E Swanzey… - Cell reports, 2016 - cell.com
During class switch recombination (CSR), B cells replace the Igh Cμ or δ exons with another
downstream constant region exon (C H ), altering the antibody isotype. CSR occurs through …

[PDF][PDF] A bipartite element with allele-specific functions safeguards DNA methylation imprints at the Dlk1-Dio3 locus

BE Aronson, L Scourzic, V Shah, E Swanzey… - Developmental cell, 2021 - cell.com
Loss of imprinting (LOI) results in severe developmental defects, but the mechanisms preventing
LOI remain incompletely understood. Here, we dissect the functional components of the …

[HTML][HTML] Trim32 deficiency enhances Th2 immunity and predisposes to features of atopic dermatitis

…, J Hanifin, E Simpson, Y Wang, E Swanzey… - Journal of Investigative …, 2017 - Elsevier
Altered innate immunity is a feature of certain skin inflammatory diseases such as psoriasis
and atopic dermatitis (AD). In this study, we provide evidence that deficiency in Trim32 (a …

Dermal reflectivity determined by optical coherence tomography is an indicator of epidermal hyperplasia and dermal edema within inflamed skin

…, D Levitz, N Choudhury, E Swanzey… - … of biomedical optics, 2011 - spiedigitallibrary.org
Psoriasis is a common inflammatory skin disease resulting from genetic and environmental
alterations of cutaneous immune responses. While numerous therapeutic targets involved in …

[PDF][PDF] A susceptibility locus on chromosome 13 profoundly impacts the stability of genomic imprinting in mouse pluripotent stem cells

E Swanzey, TF McNamara, E Apostolou, M Tahiliani… - Cell Reports, 2020 - cell.com
Swanzey et al. provide strong evidence that this instability at imprinted loci is controlled by
genetic determinants and map a candidate regulator to a region on mouse chromosome 13. …

A reporter model to visualize imprinting stability at the Dlk1 locus during mouse development and in pluripotent cells

E Swanzey, M Stadtfeld - Development, 2016 - journals.biologists.com
… (E) Possible applications of the Dlk1 reporter model to study … (E) Possible applications of
the Dlk1 reporter model to study … (E) Possible applications of the Dlk1 reporter model to study …

Protein coding variation in the J: ARC and J: DO outbred laboratory mouse stocks provides a molecular basis for distinct research applications

BK Cornes, C Paisie, E Swanzey… - G3: Genes …, 2023 - academic.oup.com
Outbred laboratory mice (Mus musculus) are readily available and have high fecundity,
making them a popular choice in biomedical research, especially toxicological and …