User profiles for D. Türei
Dénes TüreiHeidelberg University, Uniklinik RWTH Aachen, EMBL Heidelberg Verified email at embl.de Cited by 2705 |
Complex regulation of autophagy in cancer–Integrated approaches to discover the networks that hold a double-edged sword
J Kubisch, D Türei, L Földvári-Nagy, ZA Dunai… - Seminars in cancer …, 2013 - Elsevier
… Turei D, Foldvari-Nagy L, Fazekas D, Csermely P, Korcsmaros T and Vellai T). ARN contains
the 38 autophagy core proteins with 236 interactions. For all interactions, the exact sources …
the 38 autophagy core proteins with 236 interactions. For all interactions, the exact sources …
[HTML][HTML] Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data
The growing availability of single-cell data, especially transcriptomics, has sparked an
increased interest in the inference of cell-cell communication. Many computational tools were …
increased interest in the inference of cell-cell communication. Many computational tools were …
Benchmark and integration of resources for the estimation of human transcription factor activities
The prediction of transcription factor (TF) activities from the gene expression of their targets (ie,
TF regulon) is becoming a widely used approach to characterize the functional status of …
TF regulon) is becoming a widely used approach to characterize the functional status of …
OmniPath: guidelines and gateway for literature-curated signaling pathway resources
Resources that capture information about signaling pathways from the literature are essential
for the experimental design and analysis of many biological studies. Multiple resources are …
for the experimental design and analysis of many biological studies. Multiple resources are …
[HTML][HTML] SignaLink 2–a signaling pathway resource with multi-layered regulatory networks
… elegans and D. melanogaster; 2) combines manual curation with large-scale datasets; 3) …
d) An interactive network of first neighbors is available, visualized by the CytoscapeWeb …
d) An interactive network of first neighbors is available, visualized by the CytoscapeWeb …
Integrated intra‐and intercellular signaling knowledge for multicellular omics analysis
D Türei, A Valdeolivas, L Gul… - Molecular systems …, 2021 - embopress.org
Molecular knowledge of biological processes is a cornerstone in omics data analysis. Applied
to single‐cell data, such analyses provide mechanistic insights into individual cells and …
to single‐cell data, such analyses provide mechanistic insights into individual cells and …
Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities
…, P Badia-i-Mompel, R Fallegger, D Türei… - Nucleic Acids …, 2023 - academic.oup.com
… (D) Overview of the number of TFs identified from expression (beige), activity (green) or both
… (D) Overview of the number of TFs identified from expression (beige), activity (green) or both …
… (D) Overview of the number of TFs identified from expression (beige), activity (green) or both …
[HTML][HTML] The NRF2-related interactome and regulome contain multifunctional proteins and fine-tuned autoregulatory loops
NRF2 is a well-known, master transcription factor (TF) of oxidative and xenobiotic stress
responses. Recent studies uncovered an even wider regulatory role of NRF2 influencing …
responses. Recent studies uncovered an even wider regulatory role of NRF2 influencing …
[HTML][HTML] Adipocyte-secreted BMP8b mediates adrenergic-induced remodeling of the neuro-vascular network in adipose tissue
… d–f Fold variation of mRNA levels of ECs (d), pericyte (e) markers and angiogenic factor
receptors (f) in ScW from 4-week-old Bmp8b TG female mice, n = 4–6. Data are expressed in …
receptors (f) in ScW from 4-week-old Bmp8b TG female mice, n = 4–6. Data are expressed in …
Autophagy Regulatory Network—A systems-level bioinformatics resource for studying the mechanism and regulation of autophagy
Autophagy is a complex cellular process having multiple roles, depending on tissue,
physiological, or pathological conditions. Major post-translational regulators of autophagy are well …
physiological, or pathological conditions. Major post-translational regulators of autophagy are well …