User profiles for D. Schapiro

Denis Schapiro

Group Leader at the Heidelberg University Hospital
Verified email at bioquant.uni-heidelberg.de
Cited by 5772

[PDF][PDF] The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution

…, D Pe'er, S Santagata, AK Shalek, D Schapiro… - Cell, 2020 - cell.com
Crucial transitions in cancer—including tumor initiation, local expansion, metastasis, and
therapeutic resistance—involve complex interactions between cells within the dynamic tumor …

Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry

C Giesen, HAO Wang, D Schapiro, N Zivanovic… - Nature …, 2014 - nature.com
… license imaging mass cytometry technology from D. Günther represented by ETH Zürich,
which includes a related funded research collaboration benefiting the D. Günther and BB labs. …

[HTML][HTML] A molecular single-cell lung atlas of lethal COVID-19

…, S Tagore, I Katsyv, AF Rendeiro, AD Amin, D Schapiro… - Nature, 2021 - nature.com
Respiratory failure is the leading cause of death in patients with severe SARS-CoV-2
infection 1 , 2 , but the host response at the lung tissue level is poorly understood. Here we …

Meta-analysis of comparative therapy outcome studies: a replication and refinement.

DA Shapiro, D Shapiro - Psychological bulletin, 1982 - psycnet.apa.org
Conducted a meta-analysis of 143 outcome studies in which 2 or more treatments were
compared with a control group. Consistent with previous reviews, the mean of the 1,828 effect …

Single-nucleus and spatial transcriptome profiling of pancreatic cancer identifies multicellular dynamics associated with neoadjuvant treatment

…, O Ashenberg, SL Farhi, D Schapiro… - Nature …, 2022 - nature.com
Pancreatic ductal adenocarcinoma (PDAC) is a highly lethal and treatment-refractory cancer.
Molecular stratification in pancreatic cancer remains rudimentary and does not yet inform …

Using Mechanical Turk to study clinical populations

DN Shapiro, J Chandler… - Clinical psychological …, 2013 - journals.sagepub.com
Although participants with psychiatric symptoms, specific risk factors, or rare demographic
characteristics can be difficult to identify and recruit for participation in research, participants …

High-definition spatial transcriptomics for in situ tissue profiling

…, F Salmén, J Klughammer, L Stenbeck, D Schapiro… - Nature …, 2019 - nature.com
Spatial and molecular characteristics determine tissue function, yet high-resolution methods
to capture both concurrently are lacking. Here, we developed high-definition spatial …

[HTML][HTML] Immunogenomic profiling determines responses to combined PARP and PD-1 inhibition in ovarian cancer

…, Z Maliga, C Yapp, YA Chen, D Schapiro… - Nature …, 2020 - nature.com
Combined PARP and immune checkpoint inhibition has yielded encouraging results in
ovarian cancer, but predictive biomarkers are lacking. We performed immunogenomic profiling …

histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data

D Schapiro, HW Jackson, S Raghuraman, JR Fischer… - Nature …, 2017 - nature.com
Single-cell, spatially resolved omics analysis of tissues is poised to transform biomedical
research and clinical practice. We have developed an open-source, computational histology …

[HTML][HTML] Spatial multi-omic map of human myocardial infarction

…, EMJ Bindels, L Schurgers, S Sattler, D Schapiro… - Nature, 2022 - nature.com
… Colours along the bottom correspond to the cell types in d. f, Uniform manifold approximation
and projection (UMAP) of snATAC-seq data for all samples (n = 46,068). g, Chromatin …