User profiles for D. Portik
Daniel PortikStaff Bioinformatics Scientist, PacBio Verified email at pacificbiosciences.com Cited by 2060 |
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities
… able to identify candidate hosts for assembled plasmid sequence (d) in the HiFi assembly. …
Porubsky, D. et al. Fully phased human genome assembly without parental data using single-…
Porubsky, D. et al. Fully phased human genome assembly without parental data using single-…
A high-quality Ixodes scapularis genome advances tick science
Ixodes spp. and related ticks transmit prevalent infections, although knowledge of their
biology and development of anti-tick measures have been hindered by the lack of a high-quality …
biology and development of anti-tick measures have been hindered by the lack of a high-quality …
Evaluating mechanisms of diversification in a Guineo‐Congolian tropical forest frog using demographic model selection
The accumulation of biodiversity in tropical forests can occur through multiple allopatric and
parapatric models of diversification, including forest refugia, riverine barriers and ecological …
parapatric models of diversification, including forest refugia, riverine barriers and ecological …
Metagenome assembly of high-fidelity long reads with hifiasm-meta
… d, Phylogeny of human gut MAGs from the co-assembly. A colored clade corresponds to a
phylum inferred by GTDB-Tk 18,19 . A MAG is omnivore/vegan specific if 90% of reads in the …
phylum inferred by GTDB-Tk 18,19 . A MAG is omnivore/vegan specific if 90% of reads in the …
Cryptic diversity of a widespread global pathogen reveals expanded threats to amphibian conservation
Biodiversity loss is one major outcome of human-mediated ecosystem disturbance. One way
that humans have triggered wildlife declines is by transporting disease-causing agents to …
that humans have triggered wildlife declines is by transporting disease-causing agents to …
[HTML][HTML] Genetics, Morphology, Advertisement Calls, and Historical Records Distinguish Six New Polyploid Species of African Clawed Frog (Xenopus, Pipidae) from …
…, DB Kelley, PJ McLaughlin, OSG Pauwels, DM Portik… - PloS one, 2015 - journals.plos.org
… known to be present in ZMB, (ZMB 8328A-D, including one tadpole in metamorphosis), ZMB
8329 (… D. Rungger (specimen from captive population originally housed in Laboratoire de …
8329 (… D. Rungger (specimen from captive population originally housed in Laboratoire de …
An evaluation of transcriptome‐based exon capture for frog phylogenomics across multiple scales of divergence (Class: Amphibia, Order: Anura)
DM Portik, LL Smith, K Bi - Molecular ecology resources, 2016 - Wiley Online Library
… Samples were pooled for capture reactions according to phylogenetic relatedness as
determined by 16S mtDNA data (DM Portik, unpublished data). Typical pools contained 5–6 …
determined by 16S mtDNA data (DM Portik, unpublished data). Typical pools contained 5–6 …
[HTML][HTML] Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets
Background Long-read shotgun metagenomic sequencing is gaining in popularity and
offers many advantages over short-read sequencing. The higher information content in long …
offers many advantages over short-read sequencing. The higher information content in long …
Redefining possible: combining phylogenomic and supersparse data in frogs
The data available for reconstructing molecular phylogenies have become wildly disparate.
Phylogenomic studies can generate data for thousands of genetic markers for dozens of …
Phylogenomic studies can generate data for thousands of genetic markers for dozens of …
Sexual dichromatism drives diversification within a major radiation of African amphibians
Abstract Theory predicts that sexually dimorphic traits under strong sexual selection, particularly
those involved with intersexual signaling, can accelerate speciation and produce bursts …
those involved with intersexual signaling, can accelerate speciation and produce bursts …