… (D) Overview of the cell lines and cellular compartments available for lncRNA RCI
calculations. “LncRNA genes” column indicates the number of lncRNA for which the RCI could be …

Genome sequencing can be used to detect DNA repair failures in tumors and learn about
underlying mechanisms. Here, we synthesize findings from genomic studies that examined …

… d Number of basepairs and number of overlapping hCIS for cancer driver protein-coding
genes (CGC), non-cancer driver protein-coding genes (nonCGC), cancer-related lncRNAs (…

… d, Poisson mixture modeling of the number of A3-context mutations per cluster. A solution
with two distributions is shown (teal: kataegis; orange: omikli). The stacked bars show …

… c, d Linear fit with age (c) and yearly increase (d) of potentially pathogenic variants in KT2
vs KT1-SAT-VAT clones. Potentially pathogenic variants are defined as follows: all variants …

Determining the cancer type and molecular subtype has important clinical implications. The
primary site is however unknown for some malignancies discovered in the metastatic stage. …

… Our brainenriched UMRs showed a less striking selectivity (Figure 3D). Overall, the variability
in local mutation rates at UMRs at the tissue level is explained both by the signatures the …

… In particular, we genotyped the most relevant variants of the system (D/d, E/e, and C/c), and
sequenced three ~6 kb flanking regions surrounding the Rh genes in Basques and also in …

In the published version of this paper, the members of the Pan-Cancer Analysis of Whole
Genomes (PCAWG) Consortium were listed in the Supplementary Information; however, these …

… as the “D” genotype, we added up mutations of type c from all mice with the “D” genotype and
… For the “D” allele and the BXD68 hypermutator allele, we divided the relative rate of each …