Macromolecular modeling and design in Rosetta: recent methods and frameworks
The Rosetta software for macromolecular modeling, docking and design is extensively used
in laboratories worldwide. During two decades of development by a community of …
in laboratories worldwide. During two decades of development by a community of …
Computer-aided antibody design
D Kuroda, H Shirai, MP Jacobson… - … engineering, design & …, 2012 - academic.oup.com
Recent clinical trials using antibodies with low toxicity and high efficiency have raised
expectations for the development of next-generation protein therapeutics. However, the process of …
expectations for the development of next-generation protein therapeutics. However, the process of …
Design and mechanical properties of new β type titanium alloys for implant materials
D Kuroda, M Niinomi, M Morinaga, Y Kato… - Materials Science and …, 1998 - Elsevier
… For alloys, the average values of B o and M d are defined by taking the compositional
averages of the parameters and denote them B o and M d , respectively. B o and M d values, and …
averages of the parameters and denote them B o and M d , respectively. B o and M d values, and …
Current advances in biopharmaceutical informatics: guidelines, impact and challenges in the computational developability assessment of antibody therapeutics
…, JT Hadsund, U Kar, K Krawczyk, D Kuroda… - MAbs, 2022 - Taylor & Francis
Therapeutic monoclonal antibodies and their derivatives are key components of clinical
pipelines in the global biopharmaceutical industry. The availability of large datasets of antibody …
pipelines in the global biopharmaceutical industry. The availability of large datasets of antibody …
[HTML][HTML] Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE)
The Rosetta molecular modeling software package provides experimentally tested and
rapidly evolving tools for the 3D structure prediction and high-resolution design of proteins, …
rapidly evolving tools for the 3D structure prediction and high-resolution design of proteins, …
Young's modulus and mechanical properties of Ti-29Nb-13Ta-4.6Zr in relation to α″ martensite
YL Hao, R Yang, M Niinomi, D Kuroda, YL Zhou… - … Materials Transactions A, 2002 - Springer
An investigation on the formation of α″ martensite and its influence on Young’s modulus and
mechanical properties of forged Ti-29Nb-13Ta-4.6Zr (wt pct) alloy is reported in this article. …
mechanical properties of forged Ti-29Nb-13Ta-4.6Zr (wt pct) alloy is reported in this article. …
Three-dimensional hole drilling of silica glass from the rear surface with femtosecond laser pulses
Y Li, K Itoh, W Watanabe, K Yamada, D Kuroda… - Optics letters, 2001 - opg.optica.org
By moving silica glass in a preprogrammed structure, we directly produced three-dimensional
holes with femtosecond laser pulses in single step. When distilled water was introduced …
holes with femtosecond laser pulses in single step. When distilled water was introduced …
Modeling and docking of antibody structures with Rosetta
…, JR Jeliazkov, S Lyskov, N Marze, D Kuroda… - Nature protocols, 2017 - nature.com
We describe Rosetta-based computational protocols for predicting the 3D structure of an
antibody from sequence (RosettaAntibody) and then docking the antibody to protein antigens (…
antibody from sequence (RosettaAntibody) and then docking the antibody to protein antigens (…
[HTML][HTML] Controlling Nutritional Status (CONUT) score is a prognostic marker for gastric cancer patients after curative resection
D Kuroda, H Sawayama, J Kurashige, M Iwatsuki, T Eto… - Gastric Cancer, 2018 - Springer
Background Controlling Nutritional Status (CONUT), as calculated from serum albumin, total
cholesterol concentration, and total lymphocyte count, was previously shown to be useful for …
cholesterol concentration, and total lymphocyte count, was previously shown to be useful for …
Asteroid catalog using Akari: AKARI/IRC mid-infrared asteroid survey
F Usui, D Kuroda, TG Müller… - Publications of the …, 2011 - academic.oup.com
We present the results of an unbiased asteroid survey in the mid-infrared wavelength region
with the Infrared Camera (IRC) on board the Japanese infrared satellite AKARI. About 20% …
with the Infrared Camera (IRC) on board the Japanese infrared satellite AKARI. About 20% …