User profiles for D. Kuroda

Daisuke Kuroda

- Verified email at kusastro.kyoto-u.ac.jp - Cited by 7140

Daisuke Kuroda

- Verified email at niid.go.jp - Cited by 3246

Macromolecular modeling and design in Rosetta: recent methods and frameworks

…, T Kortemme, G Kuenze, B Kuhlman, D Kuroda… - Nature …, 2020 - nature.com
The Rosetta software for macromolecular modeling, docking and design is extensively used
in laboratories worldwide. During two decades of development by a community of …

Computer-aided antibody design

D Kuroda, H Shirai, MP Jacobson… - … engineering, design & …, 2012 - academic.oup.com
Recent clinical trials using antibodies with low toxicity and high efficiency have raised
expectations for the development of next-generation protein therapeutics. However, the process of …

Design and mechanical properties of new β type titanium alloys for implant materials

D Kuroda, M Niinomi, M Morinaga, Y Kato… - Materials Science and …, 1998 - Elsevier
… For alloys, the average values of B o and M d are defined by taking the compositional
averages of the parameters and denote them B o and M d , respectively. B o and M d values, and …

Current advances in biopharmaceutical informatics: guidelines, impact and challenges in the computational developability assessment of antibody therapeutics

…, JT Hadsund, U Kar, K Krawczyk, D Kuroda… - MAbs, 2022 - Taylor & Francis
Therapeutic monoclonal antibodies and their derivatives are key components of clinical
pipelines in the global biopharmaceutical industry. The availability of large datasets of antibody …

[HTML][HTML] Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE)

…, FC Chou, SO Conchuir, BS Der, K Drew, D Kuroda… - PloS one, 2013 - journals.plos.org
The Rosetta molecular modeling software package provides experimentally tested and
rapidly evolving tools for the 3D structure prediction and high-resolution design of proteins, …

Young's modulus and mechanical properties of Ti-29Nb-13Ta-4.6Zr in relation to α″ martensite

YL Hao, R Yang, M Niinomi, D Kuroda, YL Zhou… - … Materials Transactions A, 2002 - Springer
An investigation on the formation of α″ martensite and its influence on Young’s modulus and
mechanical properties of forged Ti-29Nb-13Ta-4.6Zr (wt pct) alloy is reported in this article. …

Three-dimensional hole drilling of silica glass from the rear surface with femtosecond laser pulses

Y Li, K Itoh, W Watanabe, K Yamada, D Kuroda… - Optics letters, 2001 - opg.optica.org
By moving silica glass in a preprogrammed structure, we directly produced three-dimensional
holes with femtosecond laser pulses in single step. When distilled water was introduced …

Modeling and docking of antibody structures with Rosetta

…, JR Jeliazkov, S Lyskov, N Marze, D Kuroda… - Nature protocols, 2017 - nature.com
We describe Rosetta-based computational protocols for predicting the 3D structure of an
antibody from sequence (RosettaAntibody) and then docking the antibody to protein antigens (…

[HTML][HTML] Controlling Nutritional Status (CONUT) score is a prognostic marker for gastric cancer patients after curative resection

D Kuroda, H Sawayama, J Kurashige, M Iwatsuki, T Eto… - Gastric Cancer, 2018 - Springer
Background Controlling Nutritional Status (CONUT), as calculated from serum albumin, total
cholesterol concentration, and total lymphocyte count, was previously shown to be useful for …

Asteroid catalog using Akari: AKARI/IRC mid-infrared asteroid survey

F Usui, D Kuroda, TG Müller… - Publications of the …, 2011 - academic.oup.com
We present the results of an unbiased asteroid survey in the mid-infrared wavelength region
with the Infrared Camera (IRC) on board the Japanese infrared satellite AKARI. About 20% …