User profiles for D. Herschlag
Daniel HerschlagStanford University Verified email at stanford.edu Cited by 34143 |
[HTML][HTML] RNA Chaperones and the RNA Folding Problem (∗)
D Herschlag - Journal of Biological Chemistry, 1995 - ASBMB
Functional and structural inter-relationships of RNA and proteins in the execution and
control of biological processes such as RNA processing, RNA splicing, and translation are …
control of biological processes such as RNA processing, RNA splicing, and translation are …
[PDF][PDF] Catalytic promiscuity and the evolution of new enzymatic activities
PJ O'Brien, D Herschlag - Chemistry & biology, 1999 - cell.com
… and D-serine dehydratase, which catalyzes the physiological dehydratase reaction of D-serine,
both have sequence … of the Herschlag lab for helpful comments on the manuscript. …
both have sequence … of the Herschlag lab for helpful comments on the manuscript. …
Direct measurement of the full, sequence-dependent folding landscape of a nucleic acid
…, WM Behnke-Parks, K Larizadeh, D Herschlag… - Science, 2006 - science.org
Nucleic acid hairpins provide a powerful model system for understanding macromolecular
folding, with free-energy landscapes that can be readily manipulated by changing the hairpin …
folding, with free-energy landscapes that can be readily manipulated by changing the hairpin …
Precision and functional specificity in mRNA decay
…, RJ Tibshirani, D Herschlag… - Proceedings of the …, 2002 - National Acad Sciences
Posttranscriptional processing of mRNA is an integral component of the gene expression
program. By using DNA microarrays, we precisely measured the decay of each yeast mRNA, …
program. By using DNA microarrays, we precisely measured the decay of each yeast mRNA, …
Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae
…, CL Liu, PO Brown, D Herschlag - Proceedings of the …, 2003 - National Acad Sciences
We have analyzed the translational status of each mRNA in rapidly growing Saccharomyces
cerevisiae. mRNAs were separated by velocity sedimentation on a sucrose gradient, and …
cerevisiae. mRNAs were separated by velocity sedimentation on a sucrose gradient, and …
[HTML][HTML] Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system
DJ Hogan, DP Riordan, AP Gerber, D Herschlag… - PLoS …, 2008 - journals.plos.org
… We thank Maitreya Dunham, Donna Storton, Joseph DeRisi, and Adam Carroll and members
of the Brown and Herschlag labs for advice and discussions. We appreciate comments on …
of the Brown and Herschlag labs for advice and discussions. We appreciate comments on …
A single-molecule study of RNA catalysis and folding
Using fluorescence microscopy, we studied the catalysis by and folding of individual
Tetrahymena thermophila ribozyme molecules . The dye-labeled and surface-immobilized …
Tetrahymena thermophila ribozyme molecules . The dye-labeled and surface-immobilized …
[HTML][HTML] Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast
AP Gerber, D Herschlag, PO Brown - PLoS biology, 2004 - journals.plos.org
Genes encoding RNA-binding proteins are diverse and abundant in eukaryotic genomes.
Although some have been shown to have roles in post-transcriptional regulation of the …
Although some have been shown to have roles in post-transcriptional regulation of the …
[HTML][HTML] Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA
…, HL McCullough, JW Myers, D Herschlag… - PLoS …, 2009 - journals.plos.org
MicroRNAs (miRNAs) regulate gene expression posttranscriptionally by interfering with a
target mRNA's translation, stability, or both. We sought to dissect the respective contributions of …
target mRNA's translation, stability, or both. We sought to dissect the respective contributions of …
Nanomechanical measurements of the sequence-dependent folding landscapes of single nucleic acid hairpins
…, K Larizadeh, K Travers, D Herschlag… - Proceedings of the …, 2006 - National Acad Sciences
Nucleic acid hairpins provide a powerful model system for probing the formation of secondary
structure. We report a systematic study of the kinetics and thermodynamics of the folding …
structure. We report a systematic study of the kinetics and thermodynamics of the folding …