[HTML][HTML] A chromosome conformation capture ordered sequence of the barley genome
…, J Tanskanen, A Chailyan, D Sampath, D Heavens… - Nature, 2017 - nature.com
Cereal grasses of the Triticeae tribe have been the major food source in temperate regions
since the dawn of agriculture. Their large genomes are characterized by a high content of …
since the dawn of agriculture. Their large genomes are characterized by a high content of …
[HTML][HTML] Multiple wheat genomes reveal global variation in modern breeding
…, J Deek, AC Costamagna, P Fobert, D Heavens… - Nature, 2020 - nature.com
… A, B and D in these designations correspond to separate subgenomes derived from three
ancestral diploid species with similar but distinct genome structure and gene content that …
ancestral diploid species with similar but distinct genome structure and gene content that …
Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants
…, D Heavens, M Alston, D Swarbreck… - The ISME …, 2013 - academic.oup.com
Plant–microbe interactions in the rhizosphere have important roles in biogeochemical cycling,
and maintenance of plant health and productivity, yet remain poorly understood. Using …
and maintenance of plant health and productivity, yet remain poorly understood. Using …
An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for …
…, P Borrill, G Kettleborough, D Heavens… - Genome …, 2017 - genome.cshlp.org
Advances in genome sequencing and assembly technologies are generating many high-quality
genome sequences, but assemblies of large, repeat-rich polyploid genomes, such as …
genome sequences, but assemblies of large, repeat-rich polyploid genomes, such as …
[HTML][HTML] A mixed community of actinomycetes produce multiple antibiotics for the fungus farming ant Acromyrmex octospinosus
Background Attine ants live in an intensely studied tripartite mutualism with the fungus
Leucoagaricus gongylophorus, which provides food to the ants, and with antibiotic-producing …
Leucoagaricus gongylophorus, which provides food to the ants, and with antibiotic-producing …
[HTML][HTML] Nanopore adaptive sampling: a tool for enrichment of low abundance species in metagenomic samples
Adaptive sampling is a method of software-controlled enrichment unique to nanopore
sequencing platforms. To test its potential for enrichment of rarer species within metagenomic …
sequencing platforms. To test its potential for enrichment of rarer species within metagenomic …
[HTML][HTML] Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.
…, S Grasso, J Tanskanen, D Sampath, D Heavens… - Scientific Data, 2017 - nature.com
Barley (Hordeum vulgare L.) is a cereal grass mainly used as animal fodder and raw
material for the malting industry. The map-based reference genome sequence of barley cv.‘Morex’…
material for the malting industry. The map-based reference genome sequence of barley cv.‘Morex’…
[PDF][PDF] Arabidopsis thaliana and Pseudomonas pathogens exhibit stable associations over evolutionary timescales
Crop disease outbreaks are often associated with clonal expansions of single pathogenic
lineages. To determine whether similar boom-and-bust scenarios hold for wild pathosystems, …
lineages. To determine whether similar boom-and-bust scenarios hold for wild pathosystems, …
[HTML][HTML] Rapid MinION profiling of preterm microbiota and antimicrobial-resistant pathogens
RM Leggett, C Alcon-Giner, D Heavens, S Caim… - Nature …, 2020 - nature.com
The MinION sequencing platform offers near real-time analysis of DNA sequence; this
makes the tool attractive for deployment in fieldwork or clinical settings. We used the MinION …
makes the tool attractive for deployment in fieldwork or clinical settings. We used the MinION …
An Ultra High-Density Arabidopsis thaliana Crossover Map That Refines the Influences of Structural Variation and Epigenetic Features
BA Rowan, D Heavens, TR Feuerborn, AJ Tock… - Genetics, 2019 - academic.oup.com
… Dobzhansky first observed reduced crossing over near interchromosomal translocations in
D. melanogaster (Dobzhansky 1931), and this has been observed in other species (McKim et …
D. melanogaster (Dobzhansky 1931), and this has been observed in other species (McKim et …