User profiles for D. S. Rokhsar

Daniel Rokhsar

Professor of Genetics, University of California Berkeley
Verified email at berkeley.edu
Cited by 94241

[HTML][HTML] The cassava genome: current progress, future directions

…, C Fauquet, J Tohme, T Harkins, DS Rokhsar… - Tropical plant …, 2012 - Springer
The starchy swollen roots of cassava provide an essential food source for nearly a billion
people, as well as possibilities for bioenergy, yet improvements to nutritional content and …

Plant pan-genomics comes of age

…, D Goodstein, GA Wu, DS Rokhsar… - Annual Review of …, 2021 - annualreviews.org
A pan-genome is the nonredundant collection of genes and/or DNA sequences in a species.
Numerous studies have shown that plant pan-genomes are typically much larger than the …

Pathways for protein folding: is a new view needed?

…, AY Grosberg, T Tanaka, DS Rokhsar - Current opinion in …, 1998 - Elsevier
Theoretical studies using simplified models of proteins have shed light on the general
heteropolymeric aspects of the folding problem. Recent work has emphasized the statistical …

Phytozome: a comparative platform for green plant genomics

…, U Hellsten, N Putnam, DS Rokhsar - Nucleic acids …, 2012 - academic.oup.com
The number of sequenced plant genomes and associated genomic resources is growing
rapidly with the advent of both an increased focus on plant genomics from funding agencies, …

[HTML][HTML] The Sorghum bicolor genome and the diversification of grasses

…, P Westhoff, KFX Mayer, J Messing, DS Rokhsar - Nature, 2009 - nature.com
Sorghum, an African grass related to sugar cane and maize, is grown for food, feed, fibre
and fuel. We present an initial analysis of the ∼730-megabase Sorghum bicolor (L.) Moench …

The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions

…, G Werner, K Zhou, IV Grigoriev, DS Rokhsar… - Science, 2007 - science.org
Chlamydomonas reinhardtii is a unicellular green alga whose lineage diverged from land
plants over 1 billion years ago. It is a model system for studying chloroplast-based …

Community structure and metabolism through reconstruction of microbial genomes from the environment

…, PM Richardson, VV Solovyev, EM Rubin, DS Rokhsar… - Nature, 2004 - nature.com
Microbial communities are vital in the functioning of all ecosystems; however, most microorganisms
are uncultivated, and their roles in natural systems are unclear. Here, using random …

The Genome of the Diatom Thalassiosira Pseudonana: Ecology, Evolution, and Metabolism

…, K Valentin, A Vardi, FP Wilkerson, DS Rokhsar - Science, 2004 - science.org
Diatoms are unicellular algae with plastids acquired by secondary endosymbiosis. They are
responsible for ∼20% of global carbon fixation. We report the 34 million–base pair draft …

The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins

…, S Lucas, Y Kohara, M Levine, N Satoh, DS Rokhsar - Science, 2002 - science.org
The first chordates appear in the fossil record at the time of the Cambrian explosion, nearly
550 million years ago. The modern ascidian tadpole represents a plausible approximation to …

[HTML][HTML] The Phaeodactylum genome reveals the evolutionary history of diatom genomes

…, W Vyverman, A Willis, LS Wyrwicz, DS Rokhsar… - Nature, 2008 - nature.com
Diatoms are photosynthetic secondary endosymbionts found throughout marine and
freshwater environments, and are believed to be responsible for around one-fifth of the primary …