User profiles for D. P. Depledge

Daniel P. Depledge

Hannover Medical School
Verified email at mh-hannover.de
Cited by 5994

ICTV Virus Taxonomy Profile: Herpesviridae 2021

D Gatherer, DP Depledge… - Journal of General …, 2021 - microbiologyresearch.org
Members of the family Herpesviridae have enveloped, spherical virions with characteristic
complex structures consisting of symmetrical and non-symmetrical components. The linear, …

TriTrypDB: a functional genomic resource for the Trypanosomatidae

…, BP Brunk, M Carrington, DP Depledge… - Nucleic acids …, 2010 - academic.oup.com
TriTrypDB ( http://tritrypdb.org ) is an integrated database providing access to genome-scale
datasets for kinetoplastid parasites, and supporting a variety of complex queries driven by …

Comparative genomic analysis of three Leishmania species that cause diverse human disease

…, A Faulconbridge, D Jeffares, DP Depledge… - Nature …, 2007 - nature.com
Leishmania parasites cause a broad spectrum of clinical disease. Here we report the
sequencing of the genomes of two species of Leishmania: Leishmania infantum and Leishmania …

[HTML][HTML] Molecular aspects of varicella-zoster virus latency

DP Depledge, T Sadaoka, WJD Ouwendijk - Viruses, 2018 - mdpi.com
Primary varicella-zoster virus (VZV) infection causes varicella (chickenpox) and the establishment
of a lifelong latent infection in ganglionic neurons. VZV reactivates in about one-third …

Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania

…, NJ Dickens, J Wilkes, PA Bates, DP Depledge… - Genome …, 2011 - genome.cshlp.org
Leishmania parasites cause a spectrum of clinical pathology in humans ranging from
disfiguring cutaneous lesions to fatal visceral leishmaniasis. We have generated a reference …

Rapid whole-genome sequencing of Mycobacterium tuberculosis isolates directly from clinical samples

…, DT Houniet, JZM Chan, DP Depledge… - Journal of clinical …, 2015 - Am Soc Microbiol
The rapid identification of antimicrobial resistance is essential for effective treatment of
highly resistant Mycobacterium tuberculosis . Whole-genome sequencing provides …

[HTML][HTML] Specific capture and whole-genome sequencing of viruses from clinical samples

DP Depledge, AL Palser, SJ Watson, IYC Lai, ER Gray… - PloS one, 2011 - journals.plos.org
Whole genome sequencing of viruses directly from clinical samples is integral for understanding
the genetics of host-virus interactions. Here, we report the use of sample sparing target …

Going the distance: optimizing RNA-Seq strategies for transcriptomic analysis of complex viral genomes

DP Depledge, I Mohr, AC Wilson - Journal of virology, 2019 - Am Soc Microbiol
Transcriptome profiling has become routine in studies of many biological processes. However,
the favored approaches such as short-read Illumina RNA sequencing are giving way to …

[HTML][HTML] Direct RNA sequencing on nanopore arrays redefines the transcriptional complexity of a viral pathogen

DP Depledge, KP Srinivas, T Sadaoka… - Nature …, 2019 - nature.com
Characterizing complex viral transcriptomes by conventional RNA sequencing approaches
is complicated by high gene density, overlapping reading frames, and complex splicing …

RNA m6 A modification enzymes shape innate responses to DNA by regulating interferon β

RM Rubio, DP Depledge, C Bianco… - Genes & …, 2018 - genesdev.cshlp.org
Modification of mRNA by N 6-adenosine methylation (m 6 A) on internal bases influences
gene expression in eukaryotes. How the dynamic genome-wide landscape of m 6 A-modified …