User profiles for D. A. Afonnikov

Dmitry Afonnikov

Institute of Cytology and Genetics SB RAS
Verified email at bionet.nsc.ru
Cited by 1658

[HTML][HTML] Comparison of the three-dimensional organization of sperm and fibroblast genomes using the Hi-C approach

…, M Pomaznoy, AA Khabarova, DA Afonnikov… - Genome biology, 2015 - Springer
Background The three-dimensional organization of the genome is tightly connected to its
biological function. The Hi-C approach was recently introduced as a method that can be used …

Methods of high-throughput plant phenotyping for large-scale breeding and genetic experiments

DA Afonnikov, MA Genaev, AV Doroshkov… - Russian journal of …, 2016 - Springer
Phenomics is a field of science at the junction of biology and informatics which solves the
problems of rapid, accurate estimation of the plant phenotype; it was rapidly developed …

[HTML][HTML] Image-based wheat fungi diseases identification by deep learning

…, EI Gultyaeva, EA Orlova, NP Bechtold, DA Afonnikov - Plants, 2021 - mdpi.com
Diseases of cereals caused by pathogenic fungi can significantly reduce crop yields. Many
cultures are exposed to them. The disease is difficult to control on a large scale; thus, one of …

[HTML][HTML] The evolution of gene regulatory networks controlling Arabidopsis thaliana L. trichome development

AV Doroshkov, DK Konstantinov, DA Afonnikov… - BMC plant biology, 2019 - Springer
Background The variation in structure and function of gene regulatory networks (GRNs)
participating in organisms development is a key for understanding species-specific evolutionary …

[HTML][HTML] New insights from Opisthorchis felineus genome: update on genomics of the epidemiologically important liver flukes

…, H Yang, V Solovyev, SMY Lee, X Liu, DA Afonnikov… - BMC genomics, 2019 - Springer
Background The three epidemiologically important Opisthorchiidae liver flukes Opisthorchis
felineus, O. viverrini, and Clonorchis sinensis, are believed to harbour similar potencies to …

[HTML][HTML] Haplotype analysis of APOE intragenic SNPs

VN Babenko, DA Afonnikov, EV Ignatieva, AV Klimov… - BMC neuroscience, 2018 - Springer
Afonnikov and Anton V, Klimov acknowledge the support of the statistical analysis with
GenABEL program by the Federal Agency of Scientific Organizations, Project 0324-2018-0017. …

[HTML][HTML] Morphometry of the wheat spike by analyzing 2D images

…, YV Kruchinina, NP Goncharov, DA Afonnikov - Agronomy, 2019 - mdpi.com
Spike shape and morphometric characteristics are among the key characteristics of cultivated
cereals associated with their productivity. Identification of the genes controlling these traits …

Quantitative characteristics of pubescence in wheat (Triticum aestivum L.) are associated with photosynthetic parameters under conditions of normal and limited water …

…, MD Permyakova, VM Efimov, DA Afonnikov - Planta, 2019 - Springer
Main conclusion Density and length of leaf pubescence are important factors of diversity in
the response to water deficiency among wheat genotypes. Many studies evidence an …

[HTML][HTML] Classification of fruit flies by gender in images using smartphones and the YOLOv4-tiny neural network

…, LP Zakharenko, VS Koval, DA Afonnikov - Mathematics, 2022 - mdpi.com
The fruit fly Drosophila melanogaster is a classic research object in genetics and systems
biology. In the genetic analysis of flies, a routine task is to determine the offspring size and …

[HTML][HTML] Image-based classification of wheat spikes by glume pubescence using convolutional neural networks

…, VS Koval, NP Goncharov, DA Afonnikov - Frontiers in Plant …, 2024 - frontiersin.org
Introduction Pubescence is an important phenotypic trait observed in both vegetative and
generative plant organs. Pubescent plants demonstrate increased resistance to various …