The particularly interdisciplinary nature of human microbiome research makes the organization
and reporting of results spanning epidemiology, biology, bioinformatics, translational …

Given the complexity of microarray-based gene expression studies, guidelines encourage
transparent design and public data availability. Several journals require public data …

There is evidence that nonalcoholic fatty liver disease (NAFLD) is affected by gut microbiota.
Therefore, we investigated its modifications in pediatric NAFLD patients using targeted …

The concordance of RNA-sequencing (RNA-seq) with microarrays for genome-wide analysis
of differential gene expression has not been rigorously assessed using a range of chemical …

… , a problem with c classes is decomposed into q = c(c − 1) / 2 binary problems, each one
discriminating between 2 of the c classes. To solve each problem we train a linear SVM with C = …

Introduction The traditional staging system is inadequate to identify those patients with
stage II colorectal cancer (CRC) at high risk of recurrence or with stage III CRC at low risk. A …

… c Absolute numbers and overlap of differentially expressed genes (DEGs) identified by RNA-…
c, d Model performance of internal validation compared with external validation based on (c…

We show that the Confusion Entropy, a measure of performance in multiclass problems has
a strong (monotone) relation with the multiclass generalization of a classical metric, the …

We introduce a novel implementation in ANSI C of the MINE family of algorithms for computing
maximal information-based measures of dependence between two variables in large …

The search for predictive biomarkers of disease from high-throughput mass spectrometry (MS)
data requires a complex analysis path. Preprocessing and machine-learning modules are …