[HTML][HTML] COVID-19: characteristics and therapeutics

R Chilamakuri, S Agarwal - Cells, 2021 - mdpi.com
Novel coronavirus (COVID-19 or 2019-nCoV or SARS-CoV-2), which suddenly emerged in
December 2019 is still haunting the entire human race and has affected not only the …

[HTML][HTML] Performance comparison of four exome capture systems for deep sequencing

CSR Chilamakuri, S Lorenz, MA Madoui, D Vodák… - BMC genomics, 2014 - Springer
Background Recent developments in deep (next-generation) sequencing technologies are
significantly impacting medical research. The global analysis of protein coding regions in …

AZD4573 is a highly selective CDK9 inhibitor that suppresses MCL-1 and induces apoptosis in hematologic cancer cells

…, VN Roamio Franklin, C Sekhar Reddy Chilamakuri… - Clinical cancer …, 2020 - AACR
Purpose: Cyclin-dependent kinase 9 (CDK9) is a transcriptional regulator and potential
therapeutic target for many cancers. Multiple nonselective CDK9 inhibitors have progressed …

[PDF][PDF] Synthetic lethal and resistance interactions with BET bromodomain inhibitors in triple-negative breast cancer

…, A Font-Tello, S Syamala, T Xiao, CSR Chilamakuri… - Molecular cell, 2020 - cell.com
BET bromodomain inhibitors (BBDIs) are candidate therapeutic agents for triple-negative
breast cancer (TNBC) and other cancer types, but inherent and acquired resistance to BBDIs …

ARID1A influences HDAC1/BRD4 activity, intrinsic proliferative capacity and breast cancer treatment response

…, DL Couturier, S Kumar, K Kishore, CSR Chilamakuri… - Nature …, 2020 - nature.com
Using genome-wide clustered regularly interspaced short palindromic repeats (CRISPR)
screens to understand endocrine drug resistance, we discovered ARID1A and other SWI/SNF …

Characteristics, origin, and potential for cancer diagnostics of ultrashort plasma cell-free DNA

…, CG Smith, R Hänsel-Hertsch, CS Chilamakuri… - Genome …, 2022 - genome.cshlp.org
Current evidence suggests that plasma cell-free DNA (cfDNA) is fragmented around a mode
of 166 bp. Data supporting this view has been mainly acquired through the analysis of …

Contact analysis of non-Gaussian random surfaces

SK Chilamakuri, B Bhushan - Proceedings of the Institution of …, 1998 - journals.sagepub.com
Surfaces produced by machining processes such as grinding, shaping and turning and some
magnetic disk texturing processes such as sputtering and laser processing are frequently …

[HTML][HTML] A quantitative mass spectrometry-based approach to monitor the dynamics of endogenous chromatin-associated protein complexes

…, K Harvey, TI Roumeliotis, CSR Chilamakuri… - Nature …, 2018 - nature.com
Understanding the dynamics of endogenous protein–protein interactions in complex networks
is pivotal in deciphering disease mechanisms. To enable the in-depth analysis of protein …

[PDF][PDF] Phospho-regulation of ATOH1 is required for plasticity of secretory progenitors and tissue regeneration

…, A Hoyle, R Azzarelli, R Kemp, CSR Chilamakuri… - Cell stem cell, 2018 - cell.com
The intestinal epithelium is largely maintained by self-renewing stem cells but with apparently
committed progenitors also contributing, particularly following tissue damage. However, …

ZFTA Translocations Constitute Ependymoma Chromatin Remodeling and Transcription Factors

…, S Ballereau, R Stark, C Sekhar Reddy Chilamakuri… - Cancer discovery, 2021 - AACR
Ependymomas are hard-to-treat brain tumors driven by translocations between ZFTA and a
variety of transcriptional coactivators. We dissect the transforming mechanism of these fusion …