[PDF][PDF] A convergence-based framework for cancer drug resistance

DJ Konieczkowski, CM Johannessen, LA Garraway - Cancer cell, 2018 - cell.com
Despite advances in cancer biology and therapeutics, drug resistance remains problematic.
Resistance is often multifactorial, heterogeneous, and prone to undersampling. Nonetheless…

Next-generation characterization of the cancer cell line encyclopedia

…, JD Jaffe, AA Lane, DM Weinstock, CM Johannessen… - Nature, 2019 - nature.com
Large panels of comprehensively characterized human cancer models, including the Cancer
Cell Line Encyclopedia (CCLE), have provided a rigorous framework with which to study …

COT drives resistance to RAF inhibition through MAP kinase pathway reactivation

CM Johannessen, JS Boehm, SY Kim, SR Thomas… - Nature, 2010 - nature.com
Oncogenic mutations in the serine/threonine kinase B-RAF (also known as BRAF) are found
in 50–70% of malignant melanomas 1 . Pre-clinical studies have demonstrated that the B-…

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

…, A Gaillard, KE Kolb, AC Villani, CM Johannessen… - Science, 2016 - science.org
To explore the distinct genotypic and phenotypic states of melanoma tumors, we applied
single-cell RNA sequencing (RNA-seq) to 4645 single cells isolated from 19 patients, profiling …

[HTML][HTML] Dissecting therapeutic resistance to RAF inhibition in melanoma by tumor genomic profiling

…, SM Kehoe, CM Johannessen… - Journal of clinical …, 2011 - ncbi.nlm.nih.gov
A detailed understanding of the mechanisms by which tumors acquire resistance to targeted
anticancer agents should speed the development of treatment strategies with lasting clinical …

The genetic landscape of clinical resistance to RAF inhibition in metastatic melanoma

…, N Wagle, A Sucker, DJ Treacy, CM Johannessen… - Cancer discovery, 2014 - AACR
Most patients with BRAF V600 -mutant metastatic melanoma develop resistance to selective
RAF kinase inhibitors. The spectrum of clinical genetic resistance mechanisms to RAF …

[HTML][HTML] Scalable whole-exome sequencing of cell-free DNA reveals high concordance with metastatic tumors

…, M Nakabayashi, ME Taplin, CM Johannessen… - Nature …, 2017 - nature.com
Whole-exome sequencing of cell-free DNA (cfDNA) could enable comprehensive profiling
of tumors from blood but the genome-wide concordance between cfDNA and tumor biopsies …

The NF1 tumor suppressor critically regulates TSC2 and mTOR

CM Johannessen, EE Reczek… - Proceedings of the …, 2005 - National Acad Sciences
… MPNSTs were seeded at 6.5 × 10 4 cells per 6-cm well in normal growth medium containing
rapamycin (0.01, 0.1, 1.0, 10, or 100 nM) or an equal volume of vector (DMSO). After 7 days, …

[HTML][HTML] A negative feedback signaling network underlies oncogene-induced senescence

…, BW Johnson, LT McGillicuddy, CM Johannessen… - Cancer cell, 2006 - cell.com
Oncogene-induced senescence functions to limit tumor development. However, a complete
understanding of the signals that trigger this type of senescence is currently lacking. We …

A public genome-scale lentiviral expression library of human ORFs

…, O Alkan, T Bhimdi, TM Green, CM Johannessen… - Nature …, 2011 - nature.com
Functional characterization of the human genome requires tools for systematically modulating
gene expression in both loss-of-function and gain-of-function experiments. We describe …