Electrostatics in computational protein design
CL Vizcarra, SL Mayo - Current opinion in chemical biology, 2005 - Elsevier
… (CL Vizcarra and SL Mayo, unpublished results). Pokala and Handel [48 • ] have adapted
the GB method of Brooks and co-workers [49] for use in protein design. They overcome the …
the GB method of Brooks and co-workers [49] for use in protein design. They overcome the …
Comparison of random mutagenesis and semi-rational designed libraries for improved cytochrome P450 BM3-catalyzed hydroxylation of small alkanes
MMY Chen, CD Snow, CL Vizcarra… - … , Design & Selection, 2012 - academic.oup.com
Three semi-rational approaches, combinatorial site-saturation mutagenesis (CSSM) using a
reduced amino acid set and two libraries based on C orbit and CRAM computational design …
reduced amino acid set and two libraries based on C orbit and CRAM computational design …
Structure and function of the interacting domains of Spire and Fmn-family formins
Evidence for cooperation between actin nucleators is growing. The WH2-containing nucleator
Spire and the formin Cappuccino interact directly, and both are essential for assembly of …
Spire and the formin Cappuccino interact directly, and both are essential for assembly of …
Computationally designed libraries of fluorescent proteins evaluated by preservation and diversity of function
TP Treynor, CL Vizcarra, D Nedelcu… - Proceedings of the …, 2007 - National Acad Sciences
To determine which of seven library design algorithms best introduces new protein function
without destroying it altogether, seven combinatorial libraries of green fluorescent protein …
without destroying it altogether, seven combinatorial libraries of green fluorescent protein …
[HTML][HTML] Metal binding and interdomain thermodynamics of mammalian metallothionein-3: enthalpically favoured Cu+ supplants entropically favoured Zn 2+ to form Cu …
…, R Lakha, RLE Villones, M Orman, CL Vizcarra… - Chemical …, 2022 - pubs.rsc.org
Metallothioneins (MTs) are a ubiquitous class of small metal-binding proteins involved in
metal homeostasis and detoxification. While known for their high affinity for d10 metal ions, …
metal homeostasis and detoxification. While known for their high affinity for d10 metal ions, …
[HTML][HTML] The role of formin tails in actin nucleation, processive elongation, and filament bundling
CL Vizcarra, B Bor, ME Quinlan - Journal of Biological Chemistry, 2014 - ASBMB
Formins are multidomain proteins that assemble actin in a wide variety of biological processes.
They both nucleate and remain processively associated with growing filaments, in some …
They both nucleate and remain processively associated with growing filaments, in some …
[HTML][HTML] Interaction between microtubules and the Drosophila formin Cappuccino and its effect on actin assembly
EA Roth-Johnson, CL Vizcarra, JS Bois… - Journal of Biological …, 2014 - ASBMB
Formin family actin nucleators are potential coordinators of the actin and microtubule
cytoskeletons, as they can both nucleate actin filaments and bind microtubules in vitro. To gain a …
cytoskeletons, as they can both nucleate actin filaments and bind microtubules in vitro. To gain a …
One‐and two‐body decomposable Poisson‐Boltzmann methods for protein design calculations
SA Marshall, CL Vizcarra, SL Mayo - Protein Science, 2005 - Wiley Online Library
Successfully modeling electrostatic interactions is one of the key factors required for the
computational design of proteins with desired physical, chemical, and biological properties. In …
computational design of proteins with desired physical, chemical, and biological properties. In …
Autoinhibition of the formin Cappuccino in the absence of canonical autoinhibitory domains
B Bor, CL Vizcarra, ML Phillips… - Molecular biology of the …, 2012 - Am Soc Cell Biol
Formins are a conserved family of proteins known to enhance actin polymerization. Most
formins are regulated by an intramolecular interaction. The Drosophila formin, Cappuccino (…
formins are regulated by an intramolecular interaction. The Drosophila formin, Cappuccino (…
Structure of a putative ClpS N‐end rule adaptor protein from the malaria pathogen Plasmodium falciparum
The N‐end rule pathway uses an evolutionarily conserved mechanism in bacteria and
eukaryotes that marks proteins for degradation by ATP‐dependent chaperones and proteases …
eukaryotes that marks proteins for degradation by ATP‐dependent chaperones and proteases …