User profiles for B. Nystedt

Björn Nystedt

Head of Bioinformatics support, SciLifeLab
Verified email at scilifelab.se
Cited by 3496

[HTML][HTML] The Norway spruce genome sequence and conifer genome evolution

B Nystedt, NR Street, A Wetterbom, A Zuccolo, YC Lin… - Nature, 2013 - nature.com
Conifers have dominated forests for more than 200 million years and are of huge ecological
and economic importance. Here we present the draft assembly of the 20-gigabase genome …

[HTML][HTML] SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population

…, AC Syvänen, S Lundin, D Nilsson, B Nystedt… - European Journal of …, 2017 - nature.com
Here we describe the SweGen data set, a comprehensive map of genetic variation in the
Swedish population. These data represent a basic resource for clinical genetics laboratories as …

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing

…, D Ekman, M Höppner, P Jern, M Martin, B Nystedt… - elife, 2016 - elifesciences.org
… The evolutionary distance between Atlantic and Pacific herring was calculated using mtDNA
cytochrome B sequences; right panel, zoom-in on the cluster of Atlantic and Baltic herring …

[HTML][HTML] BESST-efficient scaffolding of large fragmented assemblies

K Sahlin, F Vezzi, B Nystedt, J Lundeberg… - BMC bioinformatics, 2014 - Springer
… belong to different contigs c a and c b , a link is created between c a and c b , see Figure 1a.
From this link, we can infer a relative order, orientation and distance between c a and c b . …

Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification

…, D Tworus, SM Augustine, S Mucenieks, B Nystedt… - Nature, 2016 - nature.com
b, Genetic map of cloche locus showing meiotic recombination events; critical region in red.
c, Physical map of cloche locus based on GRCz10, including 338 kb sub-telomeric region …

Genomic Insights into the Atopic Eczema-Associated Skin Commensal Yeast Malassezia sympodialis

A Gioti, B Nystedt, W Li, J Xu, A Andersson, AF Averette… - MBio, 2013 - Am Soc Microbiol
… In contrast, if the three B alleles observed were simply the result of drift, we would have
expected linkage between the A and B alleles (a1b1 and a2b2), but not the recombinant a1b2 or …

[HTML][HTML] Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants

…, P Ewels, V Wirta, M Nistér, M Käller, B Nystedt - …, 2020 - ncbi.nlm.nih.gov
Whole-genome sequencing (WGS) is a fundamental technology for research to advance
precision medicine, but the limited availability of portable and user-friendly workflows for WGS …

[PDF][PDF] Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level

…, E Pesquet, M Abdelaziz, OV Pettersson, B Nystedt… - Current Biology, 2022 - cell.com
B Genome assembly B S-locus haplotype phasing B Genome annotation B Population genomic
analyses BB Genome-wide association mapping B Comparison of TE content between …

[HTML][HTML] A major locus controls local adaptation and adaptive life history variation in a perennial plant

…, KM Robinson, IH Michelson, A Johansson, B Nystedt… - Genome biology, 2018 - Springer
b Magnification of the phenotype association results (from GEMMA) for the region … ) in a
region corresponding to the blue bar in (b). This region contains the two PtFT2 homologs (red - …

[HTML][HTML] Increased burden of ultra-rare structural variants localizing to boundaries of topologically associated domains in schizophrenia

…, R Karlsson, J Bryois, B Nystedt… - Nature …, 2020 - nature.com
Despite considerable progress in schizophrenia genetics, most findings have been for large
rare structural variants and common variants in well-imputed regions with few genes …